Array 1 116966-114197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRR010000019.1 Pectobacterium sp. CFBP8739 Pectobacterium_sp._CFBP8739_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================== ================== 116965 29 100.0 32 ............................. GTCTAGCGTATTGCCATAATTGATGACATTCA 116904 29 100.0 32 ............................. GATACCATCAAACTCCTACGTGGCACATGCGA 116843 29 100.0 32 ............................. AAGACGAGCGATTGGGAATCCTCGCTAGATAG 116782 29 100.0 32 ............................. CAACCCTGCGTCATTCATGTAATCGGCCAGCA 116721 29 100.0 32 ............................. AAGCCATCAGGCGCACGGAAAAAATAGTTGGT 116660 29 100.0 32 ............................. CAATGCACTATTGCACATAGTCTCAGATTTAC 116599 29 100.0 32 ............................. TCTGTGCTGCAGTAGTGGCAACCTCGACCTGA 116538 29 100.0 32 ............................. TCATGAGCGGACTAATCCGCCGTCGCGCCGCC 116477 29 100.0 32 ............................. ACGCAGCAATTGTGCGATATATACCTGCATGG 116416 29 100.0 32 ............................. TCAGCGGGCGATTATCTTCGCTGTGATTCATC 116355 29 100.0 32 ............................. GAACAGAGCGATTTGATGGTCAACTTGCGCCG 116294 29 100.0 32 ............................. TCGGTCCGTATATTTAAAATGAGGAGCCATTT 116233 29 100.0 32 ............................. CTATCGTTGCGTTGCAGGCGAAAAACTTCTAC 116172 29 100.0 32 ............................. GGTTAATGATGTTGTGCCATCTGAATTAGGCT 116111 29 100.0 32 ............................. GAATCAGCCGGGTTTAAATTGTTCTCGTCCGA 116050 29 100.0 32 ............................. GTCACATCACCTAATGATTTGTCAGAGGATGA 115989 29 100.0 32 ............................. CGATGGACACAAAAGAAAGACAGCTAGTAGCG 115928 29 100.0 32 ............................. GCGCAATCATTTCGTCGGGCGGGGATATTTCA 115867 29 100.0 32 ............................. CGCCCGCAACAAAAACACTCACGCGCCGAGGC 115806 29 100.0 32 ............................. GAACAAAATTTAATTCACTCATGATTTTTAAT 115745 29 100.0 32 ............................. AGCAGGCCGCGCTGGCTGAATGGCAAAAATAT 115684 29 100.0 32 ............................. ATCGTCTATCTGGCTGGGGGTAAATGTGGTCA 115623 29 100.0 32 ............................. GAATTCTTTGTGGATCTGAAAGAGATGGCTCC 115562 29 100.0 32 ............................. AGTTGTTGCGGACATTGACACATTTTGTGAGA 115501 29 100.0 32 ............................. TACAGATAATGGCTGATCGCCTTCTCGCAGCA 115440 29 100.0 32 ............................. TCTGAAACGCTGAAAGATCGTGCTGAGAAAGT 115379 29 100.0 32 ............................. TCAGGCGGCGGCAATACTCAACTGCCGGAAAA 115318 29 100.0 32 ............................. CACAACTGGCAGAGCTGCGGGGGCAAGCGGCA 115257 29 100.0 32 ............................. GCGTCGGCATGATGATCAACGCTGACCTAGCA 115196 29 100.0 32 ............................. GGGGAGTAGATGCGTACTCAGCTTGTGCGGAA 115135 29 100.0 32 ............................. CGCATCGTTCTTACGCACTTCACCTTCAAACG 115074 29 100.0 32 ............................. TATTAAACGCCGAACGTCAGTTTTCCATGAAA 115013 29 100.0 32 ............................. GTCGGCAGGCGGCAGCGTGACAAATCAGTGAT 114952 29 100.0 32 ............................. AGGTTCGCGACTGGTACGCCGTCAACGGGAAT 114891 29 100.0 32 ............................. CGAACCAACAAACGACCGTTACCGAGCGATTC 114830 29 62.1 88 ..................NNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCGGGGATAAACCGCGCTGCTTATGTTGCTAAATATCTACCGAATGC 114713 29 100.0 32 ............................. AATATGTCTTATCATCACTGCGATAATTAACG 114652 29 100.0 32 ............................. CACGAATGAGGGGAGCGATATCCCGACACTAG 114591 29 100.0 32 ............................. TGTGTGATTGCTGGGGGCTGGTGACGCTGTAT 114530 29 100.0 32 ............................. TCCCCAGAACTGATGCTAGCAACTCCATCTTT 114469 29 100.0 32 ............................. GCCATCTCATTTTTCACTACCGCATCAATATG 114408 29 100.0 32 ............................. AAACAGCGAAAGAGGCGCGGCTGTACTCGTAC 114347 29 100.0 32 ............................. TTCAGTCATTATTTGATCCTTTTGATGATGGC 114286 29 100.0 32 ............................. AAACACTGGTATACCCAGCTAACGTGGGTACA 114225 29 75.9 0 ........T.............GCTTTA. | ========== ====== ====== ====== ============================= ======================================================================================== ================== 45 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATTGAGGAGGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTTCCGCCGGACGATGCGCAGCCGCCGGCCATCCCAGAGCCGAAGCCGTTTGGTGACAGCGGTCACCGAGGGCAGGGGTAAATGAGTATGCTTGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTACGCGGCAGGTTAGCGGTATGGCTACTGGAAGTCCGTGCGGGTGTCTATGTCGGGGATACTTCGCAGCGAGTGAGGGAAATGATCTGGCAACAGATTATCGAACTGGCAGAGCAGGGTAACGTGGTGATGGCGTGGGCAACCAATACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTGGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGATTTTTTTATGCCGAAAAAAGTGTTATAAAACAATACTCTAATTTTAGA # Right flank : ATGTGGAATACTCGACCACCGCCGTCGGGTAGTTCAACCGTCAGGCTTAGCTTGCCGCCCATGGCTTCAATGTAACGCTTCAGCGTCGCCAGTTTCACATCGTTACCGCGTTGCTCAATCTGCGTGATGGAAGGCTGCTTCACTCCCATCACATCAGCTACCATTTTTTGTGAAAGCTGAAGTTCTTCCCTCAACATCTGTAAGCCTGTTTCCAGAATCATTTCATCGGCCATTTCTTTAATGCGAGACTGGCTTTCTGGTGATTGCTGCGCAATAAATTCTTTGAGCGTTTTCATGAGTGATTCCTCTTTGCCAGATGTTCGGTAAATTCATGATCCGCTGTGCGGATCATGCTGTCATAAAAGCGTTTGTCATTACTCTTATCGCCAGCACACAGCACAATAGCCTGACGTTCAGGGTCGAAAGCAAAGAAAGCACGAATAGGGCGCCCTTCATGTTGCACACGTAGTTCTTTCATATTGCGATAGCGTGAACCTTTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 339199-341856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRR010000010.1 Pectobacterium sp. CFBP8739 Pectobacterium_sp._CFBP8739_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 339199 29 100.0 32 ............................. AAATGGAGAAAAACTAATGGCATTTCATGAAA 339260 29 100.0 33 ............................. CGGTTTTTCTGCTGTCATGCGTGGAACCCGCAC 339322 29 100.0 32 ............................. TCGTACCTTGAGGATTCCGCTAACGCCACAGC 339383 29 100.0 32 ............................. ATGCGCTGGATATTATTGCGCGAGAAGTGTCT 339444 29 100.0 32 ............................. CCAATATCTTGAACCGGAATTGATGGAGTGCG 339505 29 100.0 32 ............................. CCAGCCTTCCCGCTCTTAATTCAGCCATTGCT 339566 29 100.0 33 ............................. CTATCGAGGAAGGAAAACTAAGAAGCCAAGGAA 339628 29 100.0 32 ............................. GCGTGGTCGTAATACTCACCCCTTCTTGCTGA 339689 29 100.0 32 ............................. GCCGACGCGTACAACACCAGCATGGACACAAT 339750 29 100.0 32 ............................. GGCGGGGGTGTGCGACGATGCGATTTGTAAGC 339811 29 100.0 32 ............................. GGTTAATATGCTTAAGTTTTCAAAGGAACAGA 339872 29 100.0 32 ............................. CGCATTAATGCCGCGTTCGATAACCTGATGAC 339933 29 100.0 32 ............................. GTTCGTTGGTCTAACGTCGGCCTGAGCCGAAC 339994 29 100.0 32 ............................. TGGATGGACTCACAGGGGCTTTAACGTCGATA 340055 29 100.0 32 ............................. CCTATCTTTCTAGAAAAAGTACGACACATAAG 340116 29 100.0 32 ............................. CACAGGAACAGCAGCCAGATCCGGCAATGGTT 340177 29 100.0 32 ............................. GCTGGGCGCGTGAAATCGGGTGCAATCTGACA 340238 29 100.0 32 ............................. CAAACATTAATAGAGTTGGGTATGTGATATAC 340299 29 100.0 32 ............................. AAATAGAGCAGATGAGATTAAGCCGAATGTCT 340360 29 100.0 32 ............................. GTTTGGAATCTAAACTACATCGACACTGGCGC 340421 29 100.0 32 ............................. CCGAGTTAAAAAAAGTCGGCTCTTATGCGTAC 340482 29 100.0 32 ............................. CAGGCTTCTTCATAGTCGGCGCTGTTTCGATA 340543 29 100.0 32 ............................. TCCCCTACCGATGCAGAATTGGCTACTGCGTC 340604 29 100.0 32 ............................. TGCGGTAACACGGCTGACCACCGTATAGCGAG 340665 29 100.0 32 ............................. GTCTTGCCGATTTCGAACTGATATCCACGGCA 340726 29 100.0 33 ............................. TAATCCTTTTTCGTGTCGGAGATGGTCATTTCC 340788 29 100.0 33 ............................. CATTATGGGCTGGCTCAAGGAACCCGATAGCAT 340850 29 100.0 33 ............................. GAGGCGCGCGGTGAGCAACGTAACTAATCTTGC 340912 29 100.0 32 ............................. CGGCAAAATCACCTTTGACGATACAGGAACGG 340973 29 100.0 32 ............................. AGACCGACTTCCGCCTATTCCTGATTGACCAC 341034 29 100.0 32 ............................. CACGCTAAAGGCGTTCCGATGACAATGCCGCA 341095 29 96.6 32 ............................C GATTTACCGTCCCGGTTATTGATTGCGGATAA 341156 29 100.0 33 ............................. GATCGGCTTGAACCGTGGGCATGCCACCTCTAC 341218 29 100.0 32 ............................. TAGCGCAGGTGAATATCGATGCTCAGGGTTCG 341279 29 100.0 32 ............................. AGATCGGCTATGTGTGGCGAGATCATCCGGCG 341340 29 100.0 32 ............................. AACCCGCGATTCACAAACAGCATTAGGAATAA 341401 29 100.0 32 ............................. AGCGATCACTTCTTTCCCAGCGATGGAGGCAC 341462 29 100.0 32 ............................. CCCGCTGACTGGTTCCAGTTCGACACCGACAA 341523 29 100.0 32 ............................. CGACCGTCATCGTTACTGTCATCGGTCGAGTA 341584 29 100.0 32 ............................. GTTATCGCCCCAAATGCTAGGGTTATGAGAGG 341645 29 100.0 32 ............................. CACTGGCACCATCAGACACATTAAATGACGCA 341706 29 100.0 32 ............................. CCCGCTCGCGGCGGGCTGGTTTACGTGGTGCC 341767 29 100.0 32 ............................. TCACGCGCCCGCTGATTTAAAAACATAGAAAT 341828 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.9 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : GTTTATGGACGCAGCGTGACCGATGCGTGTATTGGTTGGGAAGATACGGAATCCCTGCTGCGTCAGTTAGCGTCTGCGGTACGCGAACGCCGCAGTAAATAACACTTGAATGGCGAGCAGGAAGCTCGCCATAAAAATCCGGTACAGGCATTGGGAATTCTCACAAATCTGGCGCAATAAATTAGAACCCTACTTTATTTGTTAGGTTCTGACCAGATTGGTAACAACAACATCCAGCGTTATTCGTTTTAAAACCAGTGGGAGTGTCTCAGGATATTCTCAACACCTGTCAGATATAGAAGCACACCGCGTGCTTTCACCGTGTTAGCCTATTGAATTCTAAAAGAAAATTATCGTAATTTGGTAGAATAGAGTGGAACGCGATTTGTCTTTTTTTATCTATTGATAATCAATGAGTTATAGATATATACCGGTGTGGGAAAATCGGTAGGATTCTTTATGCTGGAAAAAATTTTATAAAACAAGTCTCTATACTTAGA # Right flank : GTCGCGTCCATCTCGTGTTGCAGCTTAGAGATAGTGTTCCCCGCACACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGCGGGGATAAACCGCGTGAAACTCATTTGCGCACCTGGATAAACCACGTGTTCCCCGCACACGCGGGGATAAACCGAGTTTTTCAAGTGGTTTTTAAACAGCAACGAAGTGTTCCCCGCACACGCGGGGATAAACCGAGTATTGCAAAAAGCATAACATTACAGTCTTGCGTGTTCCCCGCACACGCGGGGATAAACCGAAGACGTTGTCTCATGCTGTAGACACAACTGTGTGTTCCCCGCACACGCGGGGATAAACCGCGAGCAACGGCCGTCAATACATGATACCAGGCGTGTTCCCCGCACACGCGGGGATAAACCGAATGTCGAACCTGCTCCGGGCAGTAATTCCCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 342048-342504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRR010000010.1 Pectobacterium sp. CFBP8739 Pectobacterium_sp._CFBP8739_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 342048 29 100.0 32 ............................. AGTTTTTCAAGTGGTTTTTAAACAGCAACGAA 342109 29 100.0 33 ............................. AGTATTGCAAAAAGCATAACATTACAGTCTTGC 342171 29 100.0 32 ............................. AAGACGTTGTCTCATGCTGTAGACACAACTGT 342232 29 100.0 32 ............................. CGAGCAACGGCCGTCAATACATGATACCAGGC 342293 29 100.0 32 ............................. AATGTCGAACCTGCTCCGGGCAGTAATTCCCG 342354 29 100.0 32 ............................. CCAATACACAGTAATAACAGGTGCTTTAATGG 342415 29 100.0 32 ............................. TATGTGACAACCAGCGATCGCGGGGAGTCTAT 342476 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.6 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : ACCGCGACCGTCATCGTTACTGTCATCGGTCGAGTAGTGTTCCCCGCACACGCGGGGATAAACCGGTTATCGCCCCAAATGCTAGGGTTATGAGAGGGTGTTCCCCGCACACGCGGGGATAAACCGCACTGGCACCATCAGACACATTAAATGACGCAGTGTTCCCCGCACACGCGGGGATAAACCGCCCGCTCGCGGCGGGCTGGTTTACGTGGTGCCGTGTTCCCCGCACACGCGGGGATAAACCGTCACGCGCCCGCTGATTTAAAAACATAGAAATGTGTTCCCCGCACACGCGGGGATAAACCGTCGCGTCCATCTCGTGTTGCAGCTTAGAGATAGTGTTCCCCGCACACGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGCGGGGATAAACCGCGTGAAACTCATTTGCGCACCTGGATAAACCAC # Right flank : ACTCCAGCTAACAGCAATTACATACCATCAACGGTGCGGGTCAGTAATGCTGTAATAGTATGAAAAATAGTGGATATATCTGCGGTGCAGAAAGGTATTTACTCAGCAGGTGGCTGATGCGTTTTATCTTGTTCTTTATCGGTACAGTTTCGGGAAGGTATTGTTCGATACGGACTAAGGTGAGCGATACATTACACGTTAAAGCTGTGTTCGCATCGAGAAGGGTATTCTGTCGAAAGTAGATGGTATAACACTATGTCTGTCTTTTTTACCCGGCCATTACTGAAGAATTCCAGTAATGGCCGAGCTTTTCTCATTCGGGGCTAAATTACTTCGCTTTACCCTGATTTGCTACTGCAGCAGCTTTTGCAGCGATTTCGTCCGCATTGCCCAGATAGTAACGTTTGATTGGCTTGAAGTTCTCGTCGAACTCATATACCAACGGCACGCCAGTTGGGATATTCAGTTCCAGAATTTCGTCTTCGCCCATGTTGTCTAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //