Array 1 140726-141243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYC01000020.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140726 29 100.0 32 ............................. GCACAGCAACGGGCACTTCTACGCGCACCGTG 140787 29 100.0 32 ............................. ACATCGACGGCGACAACGTTGATCTGCGCTTC 140848 29 100.0 33 ............................. CTCGGAACCAGTGGCCAGGGTGCCATCGCGTCG 140910 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 140971 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 141032 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 141093 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 141154 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 141215 28 79.3 0 A..........A..C..-.....A....T | C [141219] ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGTTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150415-151299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYC01000020.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 150415 29 100.0 33 ............................. GTGCTAGGGGTGGCAGCATGAGCCAGGACTTGC 150477 29 100.0 32 ............................. CGTCCGAGAACCAGCGACGCCTGACCGGAGTC 150538 29 100.0 32 ............................. GCTGACGAATTCGGCGGCTGGACGTGCCACGT 150599 29 100.0 33 ............................. CCATGACCGGAGACTCATCGGCAGGCGCCTTGC 150661 29 100.0 32 ............................. CCGCTGGTATCGTAGTCCATGCTTTTCTCCAA 150722 29 100.0 32 ............................. GCGATCGAGCACGACCGCGCACCCGACCCGAG 150783 29 100.0 32 ............................. TCGGGCAGGCCGTCGTATCGTTCTTCGTGATC 150844 29 100.0 32 ............................. ATCGATGCGGCGAACGGGACAACTACGGTCAT 150905 29 100.0 32 ............................. GACGCGAAGGCTTGGGTAGATGGCTATCACGC 150966 29 96.6 32 ...........G................. TTGCGCTGGTAGCAGCCTGGAGAAAATACCCC 151027 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 151088 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 151149 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 151210 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 151271 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53001-54475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYC01000042.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53001 28 100.0 33 ............................ CTAGCGGGATTCCGAGGAGCTGGAGGATCCAAA 53062 28 100.0 32 ............................ TGAGCAACTCCTGGCGGACTGGATAACGACCC 53122 28 100.0 32 ............................ TGACCAAGGCCGCCCAAGTCCTGATCTTCGGC 53182 28 100.0 32 ............................ ATACCCCGTAGGGTACAGGACTGTCGAAAGAC 53242 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 53302 28 100.0 32 ............................ TAAGCGCCCCCTTGCGGGTTGGCTCAGGCCCT 53362 28 100.0 32 ............................ AAGAAACAGCGCCTGTTCGTCGACGAGTACCT 53422 28 100.0 32 ............................ ATGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 53482 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 53542 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 53602 28 100.0 32 ............................ ATCAAGTCCGAACTGGGCAATGACGGGTTCAG 53662 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 53722 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 53782 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 53842 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 53902 28 100.0 32 ............................ TCGGACTCAGGCGGACTTGCGCCAGGCCATGC 53962 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 54022 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 54082 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 54142 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 54202 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 54262 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 54322 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 54382 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [54394] 54448 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTAGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64287-62999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTYC01000042.1 Pseudomonas aeruginosa strain AZPAE14505 AZPAE14505_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64286 28 100.0 32 ............................ TATTTCGGCCTTACGGACGTTGATCCGTGGGA 64226 28 100.0 32 ............................ ACCAGGTCATCGGGCTTGAACGCGGCGTGCAG 64166 28 100.0 32 ............................ ACGTTGAGCAGGGCCACTACGGTCATATCTCG 64106 28 100.0 32 ............................ TGACTCCTCGCAAGAGCCGCTTCTTTCTCCTC 64046 28 100.0 32 ............................ AGGAACGCCGCAACGACCAGGACCACGCATGC 63986 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 63926 28 100.0 32 ............................ GCAGTCCCAGCAACAGCAATCTAGGCCGTCTC 63866 28 100.0 32 ............................ TCCGAAAGGAGAAAGACGATCGCGAGGCGCGC 63806 28 100.0 32 ............................ TGACAGGCAGGAGGACAGAATGAGCAAGCATA 63746 28 100.0 32 ............................ ATGTAGAGCGACCTGAAACCACCCACTGGATG 63686 28 100.0 32 ............................ GCGTGACCTGTTGCATGTAGCACTGGCAGACC 63626 28 100.0 32 ............................ TATTCGCCACCAGTATCTGCCCTGCTTGCGGC 63566 28 100.0 32 ............................ AGCTTTCTCAGCCATTTCCGAGGCGCAAGATA 63506 28 100.0 32 ............................ ACGAGATTCTGTGAAACCACATTGGATATAAG 63446 28 100.0 32 ............................ GACAGCCTCTGTGGCGGCGTAGTAGCCGCCGA 63386 28 100.0 32 ............................ AGCGTGACCCGCTCTTCCTGGGCCTGCTTGAA 63326 28 100.0 32 ............................ AGGCGTTCTCTGTCGGGTTCGGTCTTGTCGCG 63266 28 100.0 32 ............................ AACCTGCGACGCTGAAGGCTTGGCATGGAGTC 63206 28 100.0 32 ............................ ATGCCCAGCCTGCCGAGGTTACGACCTTGAGC 63146 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 63086 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 63026 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //