Array 1 334587-336444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOV01000057.1 Salmonella enterica subsp. enterica serovar Hadar strain ABB1048-1 NODE_159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334587 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 334648 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 334709 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 334770 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 334831 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 334892 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 334953 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 335014 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 335075 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 335136 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 335197 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335258 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335319 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 335380 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 335441 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 335502 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 335563 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 335624 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335685 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335746 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335807 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 335868 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 335929 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 335990 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 336051 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 336112 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 336173 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 336234 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 336295 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 336356 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336417 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 353126-354804 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAOV01000057.1 Salmonella enterica subsp. enterica serovar Hadar strain ABB1048-1 NODE_159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 353126 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 353187 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 353248 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 353309 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 353370 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 353431 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 353492 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 353553 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 353614 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 353675 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 353736 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 353797 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 353858 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 353919 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 353980 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 354041 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 354102 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 354164 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 354226 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 354287 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 354348 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 354409 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 354470 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 354531 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 354592 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 354653 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 354714 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 354775 29 100.0 0 ............................. | A [354802] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //