Array 1 446407-447326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023654.1 Pediococcus acidilactici strain JQII-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 446407 36 100.0 30 .................................... CAAAAGGGCGGAAGCTGGTATCCGGATGTC 446473 36 100.0 31 .................................... GCGCGTAACTATGCCAACCTTAACCAAGACC 446540 36 100.0 30 .................................... GGTGACCATACTGACCCTTACGGCTATCTA 446606 36 100.0 30 .................................... ACCACAACAATAAAATCATTTCAATAAGCA 446672 36 97.2 30 ...................A................ CAATCGAAGATGGCTGGATGCCTTGGGTTC 446738 36 100.0 30 .................................... ATGACATTACTAAAGGTACTAAGGGTTGGA 446804 36 100.0 30 .................................... AAGATGATTTCAAGCCCCTATATTTCATGT 446870 36 100.0 30 .................................... ATTCCCTATTCCGACACAGTCATGTAAGGT 446936 36 97.2 30 ....................T............... CTTCAATGTCTAAAGCTTGCTTAGCTAACG 447002 36 97.2 30 ...........................A........ AATTGTTTCTTGGACTGTTTGCCAATATTC 447068 36 100.0 30 .................................... ACGATTTACCGTTTTAGGAATGATTTAGAT 447134 35 83.3 122 .......-......................GGC.AT GAAAAAAAGGGGAGTTTAATAATTAATGCTCATAGAGTTTAAATTTGGTATAATGCGAAATGGAATTTGAGAATGATTTGGTATTGGCGATTTACTCACAATAAAAATAAGTTGCTTTTATT 447291 36 91.7 0 .................................CGT | ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 13 36 97.4 38 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAAAATTTAGTTATTCAAAAGTATTTAATTAAGATTGAACGGGTTTTTGCCGAAGGATTGGTGGATGAGCAACGTAACCAAATTCATGATCAGGTCAATCAACTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGGTAACCCATATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCCAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : TAGAGCTAAAAATCTTAGCTCAACGAGAAACGAAAACTCCTATAAGTTAATGATTACTTTAACTTATAGGAGCTTTTTGTAGTTAGAGAAGGATGTTAAATAATTGAATAATGCGTCTTATTGCGAGAGACAATAAACATTATTTAAAATTGAATACGAGAGTAACGTTAATTTTTGAACAGCTCTCAAAAAAGAAGAGTAGAAAGATAAGTTTGTTTGTAAAATTAAAGTTAAGCTTTTTTCTCATAATTTATGACTTCCTTTGTATTTGTTTTATAAATTTATAATAAAAGCAAAATTTTATTATATCAAAATCATCAACAATTTTCGAAATGATTATACCCCATAAACTTAGAAATCACAATAAAATAAGTACAGCGACCTTATATTTTATCCAGTAGAACACATTAAATAACTGATATAAAGAAAAAAACTACAGACAACAAAAACAGCCCAACCGAATCCCAATCCAGTCAGACCGTCTTAAATTTCCTACATCA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //