Array 1 95274-94575 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQW01000001.1 Escherichia coli strain 8378wD11 NODE_1_length_390007_cov_21.1863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95273 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 95212 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95151 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95090 29 100.0 32 ............................. AGAAGCTGGACACTGCATATACCGCAATCCGT 95029 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94968 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94907 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94847 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94786 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94725 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94664 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94603 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121371-120976 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQW01000001.1 Escherichia coli strain 8378wD11 NODE_1_length_390007_cov_21.1863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121370 29 96.6 32 .....T....................... CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 121309 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 121248 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 121187 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 121126 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 121065 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 121004 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 168674-167565 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQW01000003.1 Escherichia coli strain 8378wD11 NODE_3_length_246900_cov_16.2532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168673 28 100.0 32 ............................ GGATGCTTTGTGCAGGTCATTAATAGAATAAC 168613 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 168553 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 168493 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 168433 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 168373 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 168313 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 168253 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 168193 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 168132 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 168072 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 168012 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 167952 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 167892 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 167832 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 167772 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 167712 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 167652 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 167592 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178545-177735 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTQW01000003.1 Escherichia coli strain 8378wD11 NODE_3_length_246900_cov_16.2532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 178544 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 178484 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 178424 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 178364 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 178304 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 178244 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 178184 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 178124 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 178064 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 178004 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 177944 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 177884 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 177824 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 177764 28 85.7 0 ....................T...C.CT | C,A [177738,177741] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //