Array 1 255027-253411 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUW01000002.1 Salmonella enterica strain CFSAN071971 CFSAN071971_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255026 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 254965 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 254904 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 254843 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 254782 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 254721 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 254660 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 254599 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 254538 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 254477 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 254416 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 254355 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 254294 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 254233 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 254172 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 254111 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 254050 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 253989 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 253928 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 253867 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 253806 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 253745 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 253684 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 253623 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 253562 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 253501 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 253440 29 93.1 0 A...........T................ | A [253413] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 274473-271638 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUW01000002.1 Salmonella enterica strain CFSAN071971 CFSAN071971_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 274472 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 274411 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 274350 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 274289 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 274228 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 274167 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 274106 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 274045 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 273984 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 273923 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 273862 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 273801 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 273740 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 273679 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 273618 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 273557 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 273496 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 273435 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 273374 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 273313 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 273252 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 273191 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 273130 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 273069 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 273008 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 272947 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 272886 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 272825 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 272764 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 272703 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 272642 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 272580 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 272519 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 272458 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 272397 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 272336 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 272275 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 272214 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 272153 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 272092 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 272031 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 271970 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 271909 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 271848 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 271787 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 271726 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 271665 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //