Array 1 101826-103440 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBH01000001.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 887 NODE_1_length_336019_cov_22.7038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101826 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 101887 29 100.0 32 ............................. AGGCGCGGGAGGCGGCAGCGGCGGCGCAGTCC 101948 29 100.0 32 ............................. CAGATGATCATCAAAAATATCTGAACGTCTCA 102009 29 100.0 32 ............................. TGCACATTCCTTCGTCCAGATAACCAGCAGCG 102070 29 100.0 32 ............................. ATACAAAACCGTTCAGTGGGGAAAGATCTAGT 102131 29 100.0 32 ............................. CTGACCTCCTGTTTATCCTGCCCGACGTACAC 102192 29 100.0 32 ............................. GCGGTCAACGCTTGACGGCCAAATCATGGCGG 102253 29 100.0 32 ............................. CCGCCCGTGTTGCGCAGTATCGGGATTGATAT 102314 29 100.0 32 ............................. GCGTTTAACGTACTTTTCCACGCCGTCCGCTA 102375 29 100.0 32 ............................. GGGCAATTCGCGGCGGGCGATGTCGCGCAGCG 102436 29 100.0 32 ............................. TAAGCAAGGAGTGGAGAAATGATTGATTTTAG 102497 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 102558 29 100.0 32 ............................. CCAACGGACAACCAGTGTGCTGGAGTGAGGCG 102619 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 102680 29 100.0 32 ............................. TACGGGCGCAAAATCACTGAACATCTGCGCAG 102741 29 100.0 32 ............................. CTTCAGCCTGCCATTTTCTCGGACCTGTAGCG 102802 29 100.0 32 ............................. TCGGTCAGCTCGCCTTTTCGGGTCCAGGTATC 102863 29 100.0 32 ............................. CGCTGGCGCGCCACTGCATCAGTACACGCAGT 102924 29 100.0 33 ............................. GCGGCGGCATTGTTCCCGCAGATGGATACCGAC 102986 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTACGCCATCTGC 103047 29 100.0 32 ............................. TGGACGCCACCACGCTGTCAGAATACCAGTCA 103108 29 100.0 32 ............................. GAGGGGGGCGATCCGGGGTCGGGTAAAATCTG 103169 29 96.6 32 .........A................... GGTTCGGGCTGGTTTACGGTGAGCTCAATTTC 103230 29 100.0 32 ............................. CCAGCTCATCGATAAAGCGACCAACCCGCCGT 103291 29 100.0 32 ............................. TCCTCGCTTCGCTGCGGGGCCTCCGGCGCGTT 103352 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 103413 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTAATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120123-122165 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGBH01000001.1 Salmonella enterica subsp. enterica serovar 4,12:d:- strain LBMM 887 NODE_1_length_336019_cov_22.7038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120123 29 100.0 32 ............................. GCTGGTGGGTCACTATCGGCAAAATTGAACAC 120184 29 100.0 32 ............................. GACGAATGATAGTGACATTTATTTTGACGGTC 120245 29 100.0 32 ............................. GCACGCGTGCAGGATGCTCCAGACGGCCCCGA 120306 29 100.0 32 ............................. CGTCAGCGGTTGACATGGCTAGCAGCTTACGC 120367 29 100.0 32 ............................. AAAATGAAAAGCTGGCTAGCGCCGGTGAAATA 120428 29 100.0 32 ............................. CACCCTGTAAAAATAAATTACTGCCCGTTTTG 120489 29 100.0 32 ............................. GGAATTTTAAACAGAAAAAGGTAAATGTATGA 120550 29 100.0 32 ............................. GCGAATGGACAGTGCAATTCGGCGATGAAATT 120611 29 100.0 32 ............................. CCCCGGCGGGTGCCAGGGCTTGGGAGGTTAGC 120672 29 100.0 32 ............................. GCATTAATCAGCTCAATACGGACGTAGTTCAG 120733 29 100.0 32 ............................. CGGCATAATTTCAGGAATAAAAAATATGGCTG 120794 29 100.0 32 ............................. GCAGGGATTACCCGCCAGGGCCTGGAGCATGG 120855 29 100.0 32 ............................. ATCGCTATATTTAGCCCGCAGCTCACTAATAA 120916 29 100.0 32 ............................. GTTTTACAACTCAACAGACCATGAAACTGTTC 120977 29 100.0 32 ............................. TCGCCGTGAGGCATCCAGATTTAAGCAACTGC 121038 29 100.0 32 ............................. CGCATTCATTTTCAGTCTTTATCAATCGCGGG 121099 29 100.0 32 ............................. GCTAGCAATGATGCGGATTTGATGGGCGCAGG 121160 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 121221 29 100.0 32 ............................. CCTCATAATTAGTTAAGTGGTGGCGGTATTGC 121282 29 100.0 32 ............................. CCGGATCTGGAGATAACGGGGATGTTGACACA 121343 29 100.0 32 ............................. AACTGGATTTGAATTATTTATTTCACTTTCAA 121404 29 100.0 32 ............................. CCATTAACGCCGGAAGAGTCTATAGAAAAATT 121465 29 100.0 32 ............................. GCAGGCCGAATAAACGGCTTAGCGGGAATACC 121526 29 100.0 32 ............................. CCGAACAGCAGGCGATGATTGAAGCGTACGCC 121587 29 100.0 32 ............................. TATGGGTATAATTCTCCATTTGTATGCTAATG 121648 29 100.0 32 ............................. GCGTTTTTATCGTGGACGGCGCCAGCAGCGGT 121709 29 100.0 32 ............................. TGGGGTCGGTGTCGGCTATTGTGGCCGATCCG 121770 29 100.0 32 ............................. ATTCCCCAGCCAGTACCCGTGTCAGTGGGCGC 121831 29 100.0 32 ............................. TAACTGGTGAGGGTGAATTTGTTTGCATCCGT 121892 29 100.0 32 ............................. TACGCCGGGATGATTTCAACTACGTTGGACTG 121953 29 100.0 32 ............................. CCCGCGTGACGGTCTGGGGTGATCATTGATAA 122014 29 100.0 32 ............................. GGCTTTTCCTGTCAGGAGTACACAGGGTGGGT 122075 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 122136 29 100.0 0 ............................. | A [122163] ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //