Array 1 51828-48360 **** Predicted by CRISPRDetect 2.4 *** >NZ_POJJ01000027.1 Streptococcus suis strain 2151 SS_2151_Contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51827 36 100.0 30 .................................... ACAACCTATGAAGACAAGGGCATGAAATCA 51761 36 100.0 30 .................................... TTAAAAAACCTACGATTGACGAGGTAAGGA 51695 36 100.0 30 .................................... GGTTATTCCAGCGGTGAAGGTGGACACACT 51629 36 100.0 30 .................................... AACAACGCCGAGCGGTATGTTTACAGAACG 51563 36 100.0 30 .................................... ATCTACGTTTTGAGGAAATAACTGATGAAC 51497 36 100.0 30 .................................... ATTAAATAAAAAATAGGATTTAGGGCATTC 51431 36 100.0 30 .................................... AAATGAACGCTACGGAATGCCTAGAAATTC 51365 36 100.0 30 .................................... ATTGTGCCAAAATCGTCAAGCAATTCCCAA 51299 36 100.0 30 .................................... ATCCCAAAACTTAACTACATTATCATCACT 51233 36 100.0 30 .................................... CTTTCTTGTCTGTTTCGTGCTTGTGTATGC 51167 36 100.0 30 .................................... CTAACTATCCTGATGGTACTCGTGTCATCT 51101 36 100.0 30 .................................... TGTTGGCTTTGCGGGTGTGGTCGTTGCCTT 51035 36 100.0 30 .................................... GTCTATTTTATCCAACATGCGCTGTCGCGG 50969 36 100.0 30 .................................... TCCTGCGATGGTTTGCACAAATGTTTGACG 50903 36 100.0 30 .................................... ACGGCGAATATAACATCGACATCGTTACTG 50837 36 100.0 30 .................................... TCTTTTGCTTGCAACTGAGCATCATAGTTT 50771 36 100.0 30 .................................... GATAACATCTTTTGTAGACTCTGCAGAACC 50705 36 100.0 30 .................................... TGTTCTACAAATAAATCTGTAAAAGTTTGT 50639 36 100.0 30 .................................... GGATGTCCGTTGCGATTGACAGGGATGATA 50573 36 100.0 30 .................................... CAGTAGGTTCAGCTACTGTTGTCACTCTTA 50507 36 100.0 30 .................................... CGAAACTTTTACAGCTACAGCAGGGAATGT 50441 36 100.0 30 .................................... ATCAGATATTCTTCTTCAAAGATTTCGCTC 50375 36 100.0 30 .................................... AGCGTGTGAGGATTTTCCACCTAATACTGT 50309 36 100.0 30 .................................... AAGGTACTGGTTTTCAACTGGTGTAGCGTT 50243 36 100.0 30 .................................... TTCAAAAGATATTGAAACTCTTGAAAAAAT 50177 36 100.0 30 .................................... TCTCCATCCATTTTGCAAAGTACTCAGCAA 50111 36 100.0 30 .................................... ATTAACAGATTGACCTTTCTCATACCATAC 50045 36 100.0 30 .................................... TGTTAAATAGTGCAAAAGCGCAGGGCATTA 49979 36 100.0 30 .................................... TTCACAAAGGAACAATGCTTTGAGACGGCT 49913 36 100.0 30 .................................... CTTGTATCGAGGTGGTAAGCCAGTGGTTTC 49847 36 100.0 30 .................................... ATGCGAGATTTTGGCGAGACTGTCGCCCCT 49781 36 100.0 30 .................................... AGGTGAGTTTGCCAATATTACATTGCCAGA 49715 36 100.0 30 .................................... CACCGAAAGTCTGTGACAATTCAGAAATAA 49649 36 100.0 30 .................................... ATCTATATCTCGAATCTGGTACAGAGGTAT 49583 36 100.0 30 .................................... GTGACCACACTTTGAGAGTTCTTAGTCCGT 49517 36 100.0 30 .................................... CTCGCTTGGTAAACCTATGCTACCTCTAAT 49451 36 100.0 30 .................................... CGTCTATTTATCCGAACACCTTGAACTCAT 49385 36 100.0 30 .................................... ATTGTAACACCATACGGCGTATCTACCAAA 49319 36 100.0 30 .................................... TCCTCTGAAAATTGTCCAATTACATCAGTA 49253 36 100.0 30 .................................... AGTCTATAATCAACTCAGAGAAACCAATCC 49187 36 100.0 30 .................................... TTGGAGAGAAGGGCACTGGCGCAACTCTGG 49121 36 100.0 30 .................................... TGCTAATTTGTAATCAGCTAGCAAGCCATA 49055 36 100.0 30 .................................... CAGTGTGCCTGTTATTCGAACAGAGAGTCC 48989 36 100.0 30 .................................... TTAACTATGTTTTGAACAAGCCTAACTACT 48923 36 100.0 30 .................................... AGTGCTTGAGACGAATACGGAGGATGAATA 48857 36 100.0 30 .................................... CTACCGCTATCTGTACCTTGGCCACGCTAT 48791 36 100.0 30 .................................... GAACTCGAACGAATTCCGTGAGACATACCT 48725 36 100.0 30 .................................... ATGAACGATTGAATGAAATTGATGTCACAC 48659 36 100.0 30 .................................... TTCTCCTGTTTGATTTTATCAAGTTGTTCT 48593 36 100.0 30 .................................... CAATGACTAATCCTATCGGACTCGTTAAAA 48527 36 100.0 30 .................................... ATAATTTCTGCATTCCAGACATGAGTATTC 48461 36 100.0 30 .................................... ATAGCATCAAATATAAAAGCACGACCTGAT 48395 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 53 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : TGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTACTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTATTGTCCCACCCTCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTTAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTCGTGACGGACGGGATGATTGTTGGGCTGGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 274-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_POJJ01000030.1 Streptococcus suis strain 2151 SS_2151_Contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273 36 100.0 30 .................................... ACGGCGAATATAACATCCACATCGTTACTG 207 36 97.2 30 ..T................................. GTCTATTTTATCCAACATGCGCTGTCGCGG 141 36 88.9 30 .CT.....................G......T.... TCCTGCGATGGTTTGCACAAATGTTTGACG 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTCTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GATGGTTTGCACAAATGTTTGAC # Right flank : CACGGCGAATATAACATCGACATCGTTACTGGTTTTAGAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //