Array 1 289860-290498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAU01000003.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N23771 N23771_R1_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289860 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 289922 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 289983 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 290044 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 290105 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 290166 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 290227 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 290288 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 290349 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 290410 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 290471 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAU01000051.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N23771 N23771_R1_contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 111 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 172 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 233 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 294 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGCGTGGATTGATTCTGATCGCCGTGGGCGGGCG # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAU01000020.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N23771 N23771_R1_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 1 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 63 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 124 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 185 29 72.4 67 .....................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNGCGGGGATAAACCGTAAAACCGGTGCTGGATTTTGATGAAGACGAA 281 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 342 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 403 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 464 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 525 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= =================================================================== ================== 9 29 94.6 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16835-18732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAU01000020.1 Salmonella enterica subsp. enterica serovar Infantis str. CVM N23771 N23771_R1_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 16835 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 16896 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 16957 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 17018 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 17080 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 17141 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 17202 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 17263 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 17324 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 17385 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 17446 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 17507 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 17568 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 17629 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 17690 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 17751 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 17812 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 17873 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 17934 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 17995 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 18053 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 18114 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 18175 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 18236 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 18297 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 18358 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 18419 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 18480 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 18581 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 18642 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18703 29 93.1 0 A...........T................ | A [18729] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //