Array 1 5340-6562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVD010000011.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21376 FAM21376-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 5340 35 75.0 39 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA C [5353] 5415 35 80.6 35 C..-.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [5444,5447] 5487 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 5559 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 5631 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 5710 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 5783 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 5856 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 5933 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 6008 36 100.0 42 .................................... GAGATCAAGAAGTTTATCACCATGAAAGAGTTCACTTACAGA 6086 36 100.0 37 .................................... CTAAGTTAAACAAAACATGGAGACGAAGAAAAGGAGA 6159 36 100.0 40 .................................... ACTGAAAAAGTTGTCGGATCTGTACAAGATCCCGACTGAC 6235 36 100.0 37 .................................... GCCGCAAAGATGTTGACGGGTTTTTAGATTATCTTGA 6308 36 100.0 38 .................................... CTTGCAAACAGTTGTAAATGACTTAGAAAAAATTGCGG 6382 36 100.0 34 .................................... TTAATATCTTGGTTACGTGCTGGGAAGGTGACTT 6452 36 100.0 39 .................................... AAAATGACTTTAGTAAACGAATTGTTAGCATATTACAAG 6527 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 17 36 97.1 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 29750-32492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNVD010000005.1 Lactobacillus delbrueckii subsp. lactis strain FAM 21376 FAM21376-i1-1_scf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 29750 33 100.0 34 ................................. CGGATATTTGCTGGAGGTAAGTGCCAACGTCAAG 29817 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 29884 33 100.0 34 ................................. ACCAGATTGGTTGAAAACTCGGTTGATGCTTGAA 29951 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 30019 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 30087 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 30155 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 30223 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 30292 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 30362 33 100.0 37 ................................. ACAGTATCAAGGTCGTGGTTGGACACACACGTTTGCA 30432 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 30501 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 30569 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 30635 33 100.0 34 ................................. AACGGAAGCAACCCGATACTGCCAGTAACGTCTT 30702 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 30771 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 30841 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 30907 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 30977 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 31045 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 31112 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 31181 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 31249 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 31316 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 31384 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 31450 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 31516 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 31586 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 31654 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 31721 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 31787 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 31855 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 31922 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 31990 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 32058 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 32125 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 32193 33 100.0 34 ................................. TTGCCCTTGATCGTCATGACCTTGGCCGTCTTCC 32260 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 32327 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 32393 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 32460 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.5 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //