Array 1 289574-289918 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QRQW01000003.1 Bifidobacterium longum strain AF30-11 AF30-11.Scaf3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence                                       	Insertion/Deletion
==========	======	======	======	===========================	======================================================	==================
    289574	    27	  66.7	    39	G..C....C.....C...GCC....GA	ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG               	
    289640	    27	  96.3	    54	........................A..	ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC	AGA [289646]
    289724	    27	  81.5	    33	GG.A..A.................A..	ATCATCGCGATCATCGCGATCGAAGTCGCGGTC                     	
    289784	    27	 100.0	    21	...........................	GTCGTAATCATCCTCGAAGTC                                 	Deletion [289832]
    289832	    27	 100.0	    30	...........................	GTCACGATCGTCGAAGTCACGGTCATCGCG                        	
    289889	    27	  81.5	     0	C.............C.....C....CG	|                                                     	GC,C [289906,289910]
==========	======	======	======	===========================	======================================================	==================
         6	    27	  87.7	    36	ATCGGAGCGACGGCGACGCGGACGGTC	                                                      	       

# Left flank :   GACTGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCG
# Right flank :  GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG

# Questionable array : NO	 Score: 4.79
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATCGGAGCGACGGCGACGCGGACGGTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [4,0] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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