Array 1 165997-165192 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNM01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE376 376_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 165996 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 165935 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 165874 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165813 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165752 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165690 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165587 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165526 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165465 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165404 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165343 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165282 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165221 29 96.6 0 A............................ | A [165194] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184293-182129 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDNM01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE376 376_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184292 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184231 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184170 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184109 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184048 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 183987 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 183926 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 183865 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183804 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 183743 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 183682 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183621 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183560 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183499 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183438 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183377 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183316 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183255 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183194 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183133 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183072 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183011 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182950 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 182889 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 182828 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 182767 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 182706 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 182644 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 182583 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182522 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182461 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182400 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182339 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182278 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182217 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182156 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //