Array 1 3530-80 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB661299.1 Vibrio cholerae O1 str. 116063 vco116063.contig.32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3529 28 100.0 32 ............................ TTAACCAGCAATTAAAGCAGGTTCCACGCAAT 3469 28 100.0 32 ............................ TGACTATAAACTTTGGACGGGTCGCCACTCTC 3409 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 3349 28 100.0 32 ............................ ATTACTTTCAAAAATGGGTATGCGAAAAATGC 3289 28 100.0 32 ............................ TCCCACTCTGAAACCATTTTATTGAAGTGCTC 3229 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 3169 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 3109 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 3049 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 2989 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 2929 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 2869 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 2809 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 2749 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 2689 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 2629 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 2569 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 2509 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 2449 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 2389 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 2329 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 2269 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 2209 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 2149 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 2089 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 2029 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 1969 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 1909 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 1848 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 1788 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 1728 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 1668 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 1608 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 1548 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 1488 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 1428 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 1368 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 1308 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 1248 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 1188 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1128 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1068 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 1008 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 948 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 888 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 828 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 768 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 708 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 648 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 588 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 528 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 468 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 407 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 347 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 287 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 227 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 167 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 107 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //