Array 1 1488-206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENS01000016.1 Clostridium botulinum C/D str. BKT75002 Contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1487 29 100.0 36 ............................. AATAAACAAAATATAGCGAATACGATTGAGTAAACT 1422 29 100.0 36 ............................. AGAGCATCCGCTAAAGCTTGCAATGTATCAAGTCTT 1357 29 100.0 37 ............................. CTCAATTGCTTGCTTACAAAAGCTAGATTCAAATTAT 1291 29 100.0 37 ............................. CTAAATATTTCTTTATCATCTAGCGTAACCCAAACTT 1225 29 100.0 38 ............................. GTTTCTTTTATTAATTCTCTCAATTTATAATTTTCTGC 1158 29 100.0 39 ............................. CTAATTTTAGAAATAGATTATACTCATTTTACTACACAT 1090 29 100.0 37 ............................. TTTCTTTTAGTTCATCAACTTTCAGACTCTCTAAATT 1024 29 100.0 36 ............................. ATATATACAAGGGTTAGAGATACTATAAAATTGTAT 959 29 100.0 36 ............................. ACATGACATGGGACAAGTTTTATAACTATGTTGTAG 894 29 100.0 37 ............................. TTTGTAAAGCTTGGACAGTAACATTCCCAACCATTCA 828 29 100.0 36 ............................. TTCTTTAATTGACCTAATACATTAGAATTTGTACTT 763 29 100.0 35 ............................. TTTGTTTACTCTCTATGTATTCTGTACCCTTATCT 699 29 100.0 36 ............................. AAGTAATTATCTAATTCTGCAAGAGATTTATCACTA 634 29 100.0 36 ............................. ATTTTATTCACACAATCTTCATATTGTGAAGCTATA 569 29 100.0 38 ............................. GCAGATGATGGAGATGACATACCATTTTAGGAGATAAG 502 29 100.0 38 ............................. ATGATAAAATGTTACATCATTTGAAAATTGATAGTTTG 435 29 100.0 36 ............................. TCAAAAGGTTACGGATAATAATACAAGTATTAATAA 370 29 100.0 37 ............................. AACTAGTATCAGATTCAATCATTCCTTCTGTTGCAAT 304 29 100.0 36 ............................. AAGGAATATCAAAACAATATTAGTAACTGCATGATA 239 28 93.1 0 .....................T.-..... | C,ATAA,C [216,220,227] ========== ====== ====== ====== ============================= ======================================= ================== 20 29 99.7 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGAAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TTGAATAATTTTACAGTTAAATAGATAAATACTATTTTATGCTATTTTTAAATTTTCAAAAATTTTTTCTATAGGTTGGCCGTTTAAGGCTGCTGAATAAATAAAAATAATTTGAGCTTTTTTAAAATTATTTTTAGCTAATTTTAACCCTGTATTGAATTGTAAAGTTTTGCTTGAGTATAACTTACAATAAGTATAGGTTATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 438-800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENS01000067.1 Clostridium botulinum C/D str. BKT75002 Contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 438 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT A,CA,ACC [441,444,449] 510 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 574 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 640 29 100.0 37 ............................. AGCTTTGTACTTACTGTAATATTTGCTCCAAAACCGG 706 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 772 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : TCTAAAACTCTAGAATATAATTTATTAACAGACGTAAATATGCGTAAAGCAAACAGTATAGAATCTTTTAAAGATGAATCTAGATATAAAAATGCTCTTTTTATGCAATCGCCAATAGGTAAAAATTTATATAAAAATAGGCTAAAAATTGAACAATTATTTTCTATACTTAAAGGATTGTATAACCTAGAAAACCCTAGACTTTACGGACAAAAACGCTATGAACGCCATGTTAAGTGGGTTCTTTTATCATATCTTATAGACGAATTTAATAAGGTTAATAGCAAAATAAATTCTAGAAAATATCCTTGGAATCTATAGTTTTCATCGCGCTAACGCACTTACTTTTTTAAATTTTTAAAGAACTTCCTAATGCACACTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATTAG # Right flank : TAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGGTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAATAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATCATAAGTAATTTCCAAAATGAAAAAGCTTTAAAAGCAAGACAAATGTTTGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24105-25186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003339.1 Clostridium botulinum C/D str. BKT75002 plasmid p1CbBKT75002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 24105 30 100.0 36 .............................. ATTTATTATGAATTATGATTATGAACCAATAACATA 24171 30 100.0 36 .............................. AACTTCTTTGATAATACAGATAATGAAGCAAGTGAA 24237 30 100.0 37 .............................. TTATTTAAGTATTGGCTAAAGTACACCGCTAATATTC 24304 30 100.0 36 .............................. GAGTAACAAAAGCTCACAAGGAGCTTTTAAACAAGA 24370 30 100.0 34 .............................. CTTGCAGAGAATATGTAAATAAAGTGTTAGATGA 24434 30 100.0 35 .............................. CATTATGATTAATAGTATTTTATCTAAAAAGGATA 24499 30 100.0 36 .............................. TTAAAATATACAATATCTTCACAGAGCATGGAAGCC 24565 30 100.0 36 .............................. TACCGCATGTAAAAACATGTTCATCAGTTTTGATTT 24631 30 100.0 35 .............................. GTTTCTTTGTTATATAGACATGCCCAACCAAAGTC 24696 30 100.0 36 .............................. AAATACTAAGCAACTTTATTAAATTTGCTAAAGAGT 24762 30 100.0 37 .............................. AAAATAGTTTTTGCATTACACAGACATTCCTTAATTA 24829 30 100.0 35 .............................. TTCTTAAATTTTCAAACATTTGTTTACTATCATTC 24894 30 100.0 34 .............................. TAATCAGCAACCAACTTTTTAAATTCTGTTAATG 24958 30 100.0 37 .............................. GTTGAACAAGAAAGTTTAACTCTTCTTAACCCTTTCC 25025 30 100.0 37 .............................. TACCTATTTTGCTATTAGACATATTTATTGCACTTAC 25092 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 25157 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.4 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : ATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAATGATATGCATTGATATCTGATGGGAATAGGTTAGAAAATTACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTGTTGTAGAGAATAAGGCCTTAAATTATCCATTTTATATTTATGATGCGAACAATTTACATAAAATTAATGATAATGTTTTACATATGATATATAATTAGATAAAAGTAAATGATCTTTTCCCAACCGATTTTATATAGAAAAGTTGGTGGGATATAGACTATATAAGGGTTCACGTAAGGTTTGAATAATATAAAAATATTTATTAATATTTATTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTACTGTATTTATATATAAATAACTACTTCATAGTAAGGTAGTTATTTTTGTTATGCGTAAAAATAGATTGGTTGTTAATTAAAATCAAGCAGATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATTTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGTACTGTGGCAGGTCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACATATTAATCCTCCTTATATGTATATTATAAACCATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTCTTATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTGAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAGTTATGGAAGTTAAAACAATTTATCTAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 32104-33283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003339.1 Clostridium botulinum C/D str. BKT75002 plasmid p1CbBKT75002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32104 30 100.0 36 .............................. TCCTTTACTTTCTAATTTAGTTTTTTATAAAAATCA 32170 30 100.0 35 .............................. CAAGATAATTTAATGGGTTATAGTTGTATAAACAA 32235 30 100.0 36 .............................. ACAAATATTAAACGTAAAGGATTGAGTTAGCCCTCT 32301 30 100.0 36 .............................. TCAAAAACAGTACTTAATCCGGATTTTTCTATAATT 32367 30 100.0 36 .............................. ACAATTGATGTTAAATCTTGAGCATTAATTGCATTT 32433 30 100.0 37 .............................. ATATATAAAAAAAAGTCAATTAGGCAACACCATCTCA 32500 30 96.7 36 .......................C...... ACAATTTATATTATTGCTAAAGAAGGTGCTAATATG 32566 30 100.0 35 .............................. TGTTATAATATTTGTATCAATAAAAATATAATGAA 32631 30 100.0 34 .............................. ACCTTATTCCCCAGCAACTTTTTAATCTTATCTT 32695 30 100.0 36 .............................. GATAGTCTTACTCACCAATATATTAAAAGAGCTTGA 32761 30 100.0 37 .............................. GATTTGAATAATTCAAATGTGAATCAGATAGTTTTAC 32828 30 100.0 36 .............................. AAACAGTACTTGCATTAACTTTTTTATATGTAGTGT 32894 30 100.0 36 .............................. TATTTTACCTCCAAATTTTTAATTTACATTAATATA 32960 30 100.0 34 .............................. CTTTTATCAAATGGTGATATAAAACCTTTTGAAA 33024 30 100.0 36 .............................. CGAATAAATATTCCCCCTAGGAATACTTTCCCTAAA 33090 30 100.0 9 .............................. GTAGGTGGT Deletion [33129] 33129 30 86.7 30 G......G.......T..........T... TTGTATATGTTAAAATAGAAATAAATGTAG AAAC [33153] 33193 29 83.3 31 ......TT....T...-...A......... ATATTTAGTTTTAATTCACAAGGATTAGTAT T [33207] 33254 30 80.0 0 .......G......TT..A....C.....C | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 97.2 34 ATTAATAAATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAACATATAGCTAATATTAGATTTATAGAAAATATTGATATTAAAGATATTCCTGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGGGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGGTATATGAATTAAACAATACGAACAATATATATAAAATTAACAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGGTGTTTGATTTAAAAATAGATAATATATATGCACATATAAATAAAGAAGTAAAAGAAACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACACATAATTATACCAAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGGTTCCAACAGAATAAAATGGATAACAAATTAGATGAAAAAGATATAGATTATGATTACCATGGTGAATTATCTGCATTGTTGTTTATAGATATGGAATATAGTAATATTAAAGAATATACATTCAGTAATAATAGAAGACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 211-1894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENS01000038.1 Clostridium botulinum C/D str. BKT75002 Contig38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 211 29 89.7 37 A..A..G...................... TTTGGTAAATAAGAGGTTACAGGTTTTTTAAATATGT 277 29 100.0 37 ............................. TTATTTTTTATGTATTTCAATTAGATCTGGTCTATCT 343 29 100.0 36 ............................. TTTTGGTTGAGATTAATACGAGCTTTCAGACTCTTA 408 29 100.0 35 ............................. TCTATTGAAATAATAGCTCTTTCTTTAATAACTTC 472 29 100.0 38 ............................. CTCTTTTAAAAGACACTTCTAAACTTTTAATCGCACCT 539 29 100.0 38 ............................. TCGTGTCGATGCTGCCGAATTTGTCTCATAAACTCAAA 606 29 100.0 39 ............................. TTGTATAGCATATATTGAAGCGGATAATCATAATATCTT 674 29 100.0 38 ............................. CAGGAAGTTTCACGTTCAAGTTTAAACCGTTAGCGGGA 741 29 100.0 37 ............................. TTTATAAATCTCTGTGCTTGTTTCAAAATCACTCTGT 807 29 100.0 39 ............................. TAATATCCCGAAAAGTCAATACGCCCATTAGCGTTGCAA 875 29 100.0 38 ............................. TTAATACATATATGTCACCATCTTTCAGTGCCACCTCA 942 29 100.0 37 ............................. CTAAAACCTTTGCGTTGCATTTCTTCGATTGCTTCGG 1008 29 100.0 36 ............................. GGCGGATAAAATGATAAGGGATGATTTAATAGAACA 1073 29 100.0 36 ............................. AACGCTATCAATATTCCCAATACAAAGAGTATCTCT 1138 29 100.0 39 ............................. GGTTTATTATATATTTATCTTTATTAATCATATATTTAG 1206 29 100.0 36 ............................. CAACATAATACCTATAATAAGTATAGATAAATTAAA 1271 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 1338 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 1407 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 1474 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 1539 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 1605 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 1670 29 100.0 37 ............................. ATTTTTGAGGCTATCCCATTTGTTCATTATGCTTCCA 1736 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 1802 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 1866 28 82.8 0 ................TA.G.-...G... | T [1890] ========== ====== ====== ====== ============================= ======================================== ================== 26 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GCTCTAATTGAGGTTTAGTTAGATATAAATCAAAATTTAATTGTTTAAAAAATTTGTATAGTGATAATTCATTTGATATAATTAAGTTCTGAAACATTTATGCATAACTCCTTGTTATTGTTATTGTGTGAGAACTTAATTATAACAGTATTTTGTATAAATGTTTTTTTGTTTTATTTAACTGTAAAATTATTCAATCATTTTTGCACTA # Right flank : AATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATATAATGTTTTCGCTTAAAAAACCATAATATACAAAGGATGACTCAAGTATGATTATAACATTAAATATACAAAGCGAAAACATTTATTTTAAAATTTTTGAAACTGTTAATATTGCATTTAATAAACTTGGCATTAATACTAGAAAAGCTAAAGGTAGACCACCTAAATATTCAGATCAACAAATTGTTGCATGTATGATATATGGTGTAAATAATAGTATTTTTAGTCTTAGAGAACTTGAATATAAAATTAAACAAGATATTGTATTTCAAAAGATTATAGGGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //