Array 1 1029850-1031280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043509.1 Salmonella enterica subsp. enterica serovar Rissen strain GJ0703-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1029850 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 1029911 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 1029972 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 1030033 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 1030094 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 1030155 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 1030216 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 1030277 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 1030338 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 1030399 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 1030460 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 1030521 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 1030582 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 1030643 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 1030704 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 1030765 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 1030826 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 1030887 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 1030948 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 1031009 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 1031070 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 1031131 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 1031192 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1031253 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1047892-1049812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043509.1 Salmonella enterica subsp. enterica serovar Rissen strain GJ0703-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1047892 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 1047953 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 1048014 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 1048075 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 1048136 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 1048197 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 1048258 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 1048319 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 1048380 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 1048441 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 1048502 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 1048563 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1048624 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 1048685 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 1048746 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 1048807 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 1048868 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 1048929 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1048990 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1049051 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1049112 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 1049173 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 1049234 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 1049295 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 1049356 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 1049417 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 1049478 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 1049539 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1049600 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1049661 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1049722 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1049783 29 93.1 0 A...........T................ | A [1049809] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //