Array 1 289837-289089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPF010000006.1 Pseudomonas gingeri strain C4002 run0228_C4002_S31_L005_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289836 28 100.0 33 ............................ ACGAACGCATCGGTATCGCCGTACTTCCTCAAC 289775 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 289715 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 289655 28 100.0 32 ............................ CATCGATCCCGGCGTCACGGCCTTGTGCGCGC 289595 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 289535 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 289475 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 289415 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 289355 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 289295 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 289235 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 289175 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 289115 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : GCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCACGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 299403-298955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPF010000006.1 Pseudomonas gingeri strain C4002 run0228_C4002_S31_L005_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 299402 28 100.0 32 ............................ CCAGAGAAAACCATCTTGATTGCCTCCCCCAG 299342 28 100.0 32 ............................ GTATCACGAACGGTCACCTTCCGGCCCCAGTG 299282 28 100.0 32 ............................ TGATTGAAAAGTTTGTCAGCATGATTGTCTGC 299222 28 100.0 32 ............................ TCGATGGCTCTTCTCATGAATCTGTCAGCCTG 299162 28 100.0 32 ............................ AGGTGCGCGATCAGCCGCGGGAAAGAGCAGGG 299102 28 100.0 32 ............................ CCTCTTTATTGGCATGCGGTTTGCCGTTGAGG 299042 28 100.0 32 ............................ ACTTACGAGCCTGCGTCATTGCCCATCAGCCT 298982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCATTGGGCAGGCCATTGTTTGGGTCATTAGTGTCAGGCATAGGCGTCCCTTCCGTGTGAGAGCCCCCAGGTGCCCATGCCGCGCAGACCTATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGCCGATAAGCCTGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : TAACCGGGTGAACCAACGAATGGAGAGAGTCAGTTCACTGCCGTGCAGGCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCGTGCAGGCAGCTCAGAAGAGTCATTACCGCCTTGTTCGCATTGATCTGCCGTTCACTGCCGTGCAGGCAGCTCAGAAAGATTATGAGTCGGACGCTCTAACCATCTGAGCGCTCACTGCCGCATAGGCAGCTCAGAAAAAAGGCGGATTGCTGTTCACCGAGGTGGCGCACGTACCGCCGCATAAGCGGCGCAGAAATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCGGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 302272-300983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPF010000006.1 Pseudomonas gingeri strain C4002 run0228_C4002_S31_L005_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302271 28 100.0 32 ............................ TACAAGTTCGCCGACAAGTCCACCGCGCAGAT 302211 28 100.0 32 ............................ TGTCTGCCGAAAAATGATCTGGCGATCCGAAA 302151 28 100.0 32 ............................ ATTCGCGCAGGAATTCATCATATCCACCCAGG 302091 28 100.0 32 ............................ ATACGTCGCGGAGTTCGTTCGACTGCTGGTGG 302031 28 100.0 32 ............................ AGAGCCTTGTCGAACATCACTTCAGCAATCTT 301971 28 100.0 32 ............................ ATCGACGTTCAGCCAGTCATCCAGCGAGTTGT 301911 28 100.0 32 ............................ AATCAGGTCGGCGCAACTTGTGCTGTGGAAGA 301851 28 100.0 32 ............................ AAGACCATCCCTACGACCATTGAGCGCAAAGG 301791 28 100.0 32 ............................ TACAATGGCGACTTCGAAGGCGCTGACTGGAT 301731 28 100.0 32 ............................ AAGAACCTTATCGATGCTGCACGGAACCACAT 301671 28 100.0 32 ............................ TTTGCGCGTGAGGGGATTGTGCATTCTGTTGC 301611 28 100.0 32 ............................ TAACGCGTCTACCACTTCATCGACGGACTTGG 301551 28 100.0 32 ............................ GATCGGTGGAACGATGAATTTCACCGATGCAG 301491 28 100.0 32 ............................ CAACTGGTGGGCAAAGACCGCCTGGCTGGCAC 301431 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 301371 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 301311 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 301250 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 301190 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 301130 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 301070 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 301010 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCAGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGCGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : CAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCCGATCGCATCGCCAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //