Array 1 2412723-2412145 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTX01000003.1 Proteus mirabilis strain NCTC13376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2412722 29 100.0 32 ............................. GTTTCTTGGCTGGCTCTGATAATATTTATGGG 2412661 29 100.0 32 ............................. GTGGCGGTCAGGGCGACATGTACGAAGCATCA 2412600 29 100.0 32 ............................. GGGAAACCCATAACACGGTGGAGCTTATCTAA 2412539 29 100.0 32 ............................. TAATCTAAGAAGGACTTTAAACTATGGAATTA 2412478 29 100.0 32 ............................. AAATACGAACTCAACACTGTCGAGTCGATTAT 2412417 29 100.0 32 ............................. CATATCTGCTTTATCATTGTCATTTAATTTAG 2412356 29 100.0 32 ............................. TCGTCGATTTGCTCATTTGTCATTTCAGACTC 2412295 29 100.0 32 ............................. CATACATTCTTAGGTTATGAGGTGGTCGATAT 2412234 29 96.6 32 ............C................ TTATCCACGGCTTTAAAAAGTCGAGCAGGATT 2412173 29 86.2 0 .......................A..TTA | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGTGTATACGGGGATGAACCG # Left flank : AAACACTCAATAAACTTATCCCTTTAATTGAAGAAGTTCTTTCTGCGGGAGAAATTACTCCACCTGAACCACCTATTGATGCTCAACCCCCTGCAATTCCTCAAGCTCACCCTTTTGGCGATGAAGGTCATAGAGAAAAATAGTAATGAGCATGATTGTTGTTGTAACTGAAGCTGTTCCTCCTCGATTAAGAGGGCGACTTGCTGTGTGGCTATTAGAAGTGAGAGCGGGTGTATATGTTGGTAATGTTTCAGCCCGAATAAGAGAAATGATTTGGCAACAAATTAATGAGTTTGCTGAAGATGGTAATGTCGTTATGGCATGGGGAACTAATACTGAGTCAGGTTTTGATTTTCAAACCTATGGTGAGAATCGACGAGAGCCTATTGATTTTGATGGCTTGAGATTAGTGTTATTTAAGCCATATAAAGAAGATGTATAATCTTCGGTAGAAATAAATATATTTTTTTATTTAATAAAATCAAGTGAATATAATTAGA # Right flank : TCATCAAGTCTTCTCTCTTACTTGGTATTTATGCAGAGATGAATTTTTATATTTATTATATGAATAATAATGCTATTATCCTAAGTGAATATTCACAATGTGTATATTTTTGTGCCTAGTTAATTATAAAAATAGGTTTAACATCATAATCACTAAGGAAGAAAGAAGATGTCTTTAGCTATTCGATATCTTGCGTTATTACCACTTTTCGTTATTACTGCTTGCCAACAGCCTGTAAATTATAATCCACCAGCAACTCAAGTGGCTCAAGTTCAGCCTGCTATTGTCAATAATTCATGGATTGAAATTTCACGAAGCGCACTCGACTTTAATGTAAAAAAAGTCCAATCATTATTAGGTAAGCAATCCTCTCTTTGTGCAGTGTTAAAAGGAGATGCTTATGGGCATGATTTATCGTTAGTTGCCCCAATTATGATAGAAAATAATGTGCAATGTATTGGTGTAACAAATAACCAAGAATTAAAAGAAGTACGTGATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2422519-2421636 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTX01000003.1 Proteus mirabilis strain NCTC13376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2422518 29 100.0 32 ............................. CAATGACTGTCAGAAAAATGGAAAACGGACAA 2422457 29 100.0 32 ............................. GCTTTGGCAAATGTAGGTGAAAAATGAAGTTA 2422396 29 100.0 32 ............................. GATAATGCCATGGAACAGGCGAAATATATTGA 2422335 29 100.0 32 ............................. CCTGCTCGATTTTTTATATCCGTGGATAACTC 2422274 29 100.0 32 ............................. GTCATAAAAAATATTATTTTCATGATTGGCTA 2422213 29 100.0 32 ............................. TATCGGTTTCACTCTTAACCTCAAATTTAATA 2422152 29 100.0 32 ............................. CCCAATTAGCAACTGAACTCATTACGCCCCCC 2422091 29 100.0 32 ............................. GTTTACACGGCGATAGCGACTAGTAGCCATTA 2422030 29 100.0 32 ............................. GAGCAAGGTATTAGCGCAGCACTGGCAACCGG 2421969 29 100.0 32 ............................. TCAAAGCCGGTCAATCCGCCGCACTCCCATGC 2421908 29 100.0 32 ............................. GTGTAAACCGCATCTTGTTCAGGGATTTCTTT 2421847 29 100.0 32 ............................. AATGCGCAGACGACCTTTTAAGGCTTGGTTAT 2421786 29 100.0 32 ............................. GGGAACCGTTCCGCTTTGCCATCTTATTTGCA 2421725 29 100.0 32 ............................. ACAATTCATGTTGCTGAGTATTACGAAGTTGA 2421664 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : CCCCAATGCAAAACCTGCGCTTGATTGTCCCGTCGTATTTCCTTATGCACCTAATGCCGTTTTAGTCGGTTTTCTGAGTAGTTTTGCAGCGGGTGTCATTGGCATGTTTATTCTTTATGCTTTAGATTGGACTGTCATTATACCTGGGGTGGTACCTCATTTCTTTGTGGGTGCAACTGCAGGCGTATTTGGTAACGCCACAGGGGGACGCCGAGGTGCTATTTTAGGTGCTTTTGCTCAAGGTTTATTGATTACTTTCTTACCCGTATTTTTATTACCTGTACTTGGTGATATTGGTATTGCCAATACCACATTTAGTGATGCAGACTTCGGTGTGATTGGTATTCTATTAGGGATTATTGTTCGTTAATATTACCGACGTTGATATTACTTATTAGTGGAATTTTAATAAATGCTCGACTTTTTAACCAGTCGGGCATTTTTTTGGTAGAAATAGTGTATTTAAATTTTCTTTATAGATTCAATCTATTATGATTAGA # Right flank : ATCATCTTGTGCATTTTTATTATGTACTGTTTTCTAAATATTCTAAGAGTTATGTTGTGATATTAAGTGGGCAATAAATTTTGAAAAGCCACTATAGTCAATTCATATATGTTGTAAAATAGCAACATATATGAAGTTTTGATAAAGTTTAATAAGAAGTAGATCTCTTTTTAAACATTATTTAGAGAAAAAAATAGCTATTAATTGTAATATCTTCCTGTGGTAAGAGAACGAGTTAAGCGAAATGGATAAAGATTATTATAGCTACTGGGGCAAGTTTAAATCAGAAAATAATCATGAATACTATCATTTGCTTCCATATCATAGTTTGGACGTGGCTGCTGTAGGTATGATATTGTTTCCAGAAAACTCAAAAATTATAAAAGATATTTCTACTTTTTTACAAATACACCCAAAAGAATTTTCTAAACTGTTTTTATTATTGCTTTCTCTTCACGATATTGGCAAATTTTCTTCTTCATTTCAATATATTAATCCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //