Array 1 12096-14076 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUD01000014.1 Salmonella enterica strain BCW_6654 NODE_14_length_137426_cov_3.28154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12096 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 12157 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 12218 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 12279 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 12340 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 12401 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 12462 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 12523 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 12584 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 12645 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 12706 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 12767 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 12828 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 12889 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 12950 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 13011 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 13072 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 13133 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 13194 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 13255 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 13316 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 13377 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 13438 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 13499 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 13561 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 13622 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 13683 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 13744 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 13805 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 13866 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 13927 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 13988 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 14049 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30209-31013 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUD01000014.1 Salmonella enterica strain BCW_6654 NODE_14_length_137426_cov_3.28154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 30209 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 30270 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 30331 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30392 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30453 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30515 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30618 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30679 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30740 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30801 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30862 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30923 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30984 29 96.6 0 A............................ | A [31010] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //