Array 1 1501163-1495699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP056080.1 Rothia nasimurium strain E1706032 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1501162 29 100.0 32 ............................. GAAACCACCATCACCTTCTACAAGGTTAATAA 1501101 29 100.0 32 ............................. GGCGATAAGGTCACCCGAGGCCAAGAAATCGG 1501040 29 96.6 32 ............................C GCAACACCCAATGGAGCAAACACACCTCAATC 1500979 29 100.0 32 ............................. GGTGAGCTACAGGCTCAGGTGGCTGATGCTTT 1500918 29 100.0 32 ............................. ATTCGGATAAGGCGCATCAGAATGGGAATTCT 1500857 29 100.0 32 ............................. GAGCCGAGACCCCCACACGTCCGACCTTCGGG 1500796 29 100.0 32 ............................. CTGTAGAACCCTGTTGTCGCTATAACCTGCTA 1500735 29 100.0 32 ............................. GATATGGCCTGGACAGCGCCGGGAACCAACGA 1500674 29 100.0 32 ............................. AACCTAACGAGAAGTCCCCAGAGCGCAAGAAC 1500613 29 100.0 32 ............................. AAGCTGGTCGCCCGTGACGCGATTGTGGACGG 1500552 29 100.0 32 ............................. TCCTTGATATAGCGGCGGTGGTGGTGCTGGTG 1500491 29 100.0 32 ............................. TCAGAGGCATGGCTACTCCAGAATGTCTTTGT 1500430 29 100.0 32 ............................. GGCAAGGGGTATCAGCAGGCCCCAACACAGCA 1500369 29 100.0 32 ............................. GGCTCGGACGGTGAGGGTTGCGATGCCTTCCC 1500308 29 100.0 32 ............................. ATGATTGAGATGGGTGGGACTGTGGCAACTGT 1500247 29 96.6 32 ............................T GGAGGTGTACGGGGCTACCCTGGCCGGTAGGC 1500186 29 96.6 32 ............................T ACCAGAGACCGCGGCGATAGGTGAGGGCAAGT 1500125 29 96.6 32 ............................C AGGGCGACACCAGCGGCGTTACGTGCCATAGG 1500064 29 100.0 32 ............................. AATGCGTGTTGAGCACGTCATGGCGCGTAGCG 1500003 29 100.0 32 ............................. AGCTAATCCAGCTGATGCCGGATTTTTTGAAG 1499942 29 100.0 32 ............................. TGCCGCCCTGGTGCTGGGCGATGCCTATGAGG 1499881 29 96.6 32 ............................C ATTTCCACTTCTATTGTGGATGGCGTGTATCC 1499820 29 100.0 32 ............................. AATATCCCCTCGCTTGACGACTGTTCCGGGAG 1499759 29 96.6 32 ............................T GGATGGCGCGCAACCTAATGTTCGGTCATCGA 1499698 29 100.0 32 ............................. CCGTAGGTTCCAGCGCCGCCTTGGGCAAAAGA 1499637 29 100.0 32 ............................. GAGTGTAAGCCGTGATTATCCGTGAAGCTATC 1499576 29 96.6 32 ............................C GTCGTGCAGCAGCGTGCCGGGACCCAGTCAGT 1499515 29 100.0 32 ............................. GGTGCGCTGCAGGTTCGGACCGACCTTTTCCA 1499454 29 100.0 32 ............................. GCCAAGGCTGAGATTCAGTTACTTACCCAAGA 1499393 29 100.0 32 ............................. GTGGTAGTGCCAGCTACTGGGTCATGGGAGAC 1499332 29 96.6 32 ............................T GGGAGCATAGGTCATAGAACCACCGGCAACCA 1499271 29 100.0 32 ............................. GTGGTGGCGATATGAGCCACAAAGGTAACCCT 1499210 29 100.0 32 ............................. CAGTCGGGGTATCTCCCAACCCCCTAAAATCC 1499149 29 96.6 32 ............................C GGTGACTTTCAGACCGCGCTCATCTTCTTCAG 1499088 29 100.0 32 ............................. ACCCTTGCCAGCATGACCGATACCGAGGGCCG 1499027 29 100.0 32 ............................. TGGGTGGAAAAGGGCCGCGCCGGTACTGACCC 1498966 29 96.6 32 ............................C ATTATCGACCCCGTAGGGTTCGAGTCCACCAT 1498905 29 96.6 32 ............................C GCGGGTAAGGCATAATCCCCGATGTACCCCAT 1498844 29 100.0 32 ............................. AGCACGGGTGCACCCTGATCGAGAAGCAGAAC 1498783 29 100.0 32 ............................. TGTCATAGGCCCGTACCCAGGGCACAGCCGCG 1498722 29 100.0 32 ............................. GTGCCAGCTCTAGCGCTGCCCTACTAGGTGGA 1498661 29 96.6 32 ............................C TGCAAGCCACCGATGAAAACTGACTTGATCAG 1498600 29 100.0 32 ............................. TCTAGCCGGTCTGGCACAAGTCTTAGGTGGGC 1498539 29 100.0 32 ............................. TTCGAGCCCTGGAAAATTCTGGCTGGCCTGTG 1498478 29 100.0 32 ............................. CGTCACCGGCGACGAAGAAATCGCAGTTATCG 1498417 29 100.0 32 ............................. ACTAAGGATGCCTTCGTTCACGATGATGCCAT 1498356 29 96.6 32 ............................C GCGATTGGTCAGCTCGACCACAGGAACCCGGT 1498295 29 100.0 32 ............................. GGCGAGCTTGCCCTAGTAGGCACCGCCTATGA 1498234 29 96.6 32 ............................C GGGTATGAGATCCGTTGGACTGCCGAGCGCGG 1498173 29 82.8 23 ......................GTCTA.. GGCCTCAGGAAGTTTGGCTTCAT Deletion [1498122] 1498121 29 100.0 32 ............................. CCGCCCTATCCCACCACCAAGCCGAGGCACAC 1498060 29 100.0 32 ............................. ATTGAACCCTACATAGAGGGACAAGAACCAAG 1497999 29 96.6 32 ............................C GGCCTGCTCTATAAGGTGCAGCTCTCACCTGC 1497938 29 96.6 32 ............................T TATGCCAAGGCCCGCTACGGCCTCACCGGGCT 1497877 29 96.6 32 ............................T GGAAGCAAACATCGCGGCTGTCTCTGCTGCCT 1497816 29 100.0 32 ............................. AACCAGGCGCATAGTGAAAGCGCACTGATACG 1497755 29 96.6 32 ............................C ATTATCGACCCCGTAGGGTTCGAGTCCACCAT 1497694 29 100.0 32 ............................. GCGTCAGTGCATCGACCGCGGCGGCCATCTCT 1497633 29 100.0 32 ............................. GCGTCAGTGCATCGACCGCGGCGGCCATCTCT 1497572 29 96.6 32 ............................A AGTCGTCGAACTGCTCGATAGGCATGACCGCG 1497511 29 100.0 32 ............................. TGATGTGGTTGAGGGCGCGGCCTGTGAATTTG 1497450 29 100.0 32 ............................. GGGTACTCCACGCTGTATTGCTGGAACTTTGG 1497389 29 100.0 47 ............................. GAGCCCACCATGAACACCACCGCCAACACCCGCCACGCTCGCGGGGG 1497313 29 100.0 31 ............................. GGCGTGGATAATGCTCGCGGCGTGCTCTTTG 1497253 29 100.0 32 ............................. CTAGTGCCACTCTCGCCCAGTGGTGCGCGGGC 1497192 29 100.0 32 ............................. ATTAGCGCCGGGTTAGAAGAGCTGAACATCAC 1497131 29 100.0 32 ............................. GCGTCACTGACCTGTTGGCCTGTAGCGCGTGC 1497070 29 100.0 32 ............................. AGTGGGGAGTATTCGCGGAGGGTGTCGAGCAT 1497009 29 100.0 32 ............................. AACTTCAGTGATTCCATTTCATGGTTGTAGAG 1496948 29 96.6 32 ............................C GCTAAGCGCCGGGCAGCCTACGTGAAACCACC 1496887 29 100.0 32 ............................. GCCCTGCTCATGGTGCCGGACGCGGTGAAAGA 1496826 29 100.0 32 ............................. TCAGCTGGGGTTTTGTTGCCTTCGTAGTAGTA 1496765 29 100.0 32 ............................. CCCACCGTCGCCGAGATCACCGCAGGCAAGGA 1496704 29 100.0 32 ............................. CTGTGAGCCCTCAACCAGCTCGACAAGCTCCA 1496643 29 100.0 32 ............................. AGAGCCGTCCTTACCCATTGACTGAGTGTAGG 1496582 29 100.0 32 ............................. GAAGTCGCCAAGGCTTCGAAGATAGCGCCAAG 1496521 29 100.0 32 ............................. ATGTGGATGGATCATCAAGGCACAGAGCTACA 1496460 29 100.0 32 ............................. CATTATGGTGCGGCCTCTGTCCTCACAACTCG 1496399 29 100.0 32 ............................. GGGTGATAGCACCGTAAAAAACAGGCTGCTGG 1496338 29 100.0 32 ............................. TTGGATGGCCGCACCGTCTATTCCGAGATGAA 1496277 29 96.6 33 ............................A GAGGGCGGGGCATGGGCAAAAACCACGATTCTA 1496215 29 100.0 32 ............................. AAGGGGGTTCGCTGGCCCATTGCTGAGATAAA 1496154 29 100.0 32 ............................. AAGTACAGCGGAACCTGCCAGCGGCGCGGGTA 1496093 29 100.0 32 ............................. AAACCGGCCGTATCTGGCCCTCTGACCCCCTG 1496032 29 96.6 32 ............................C GCCACCACAGGGTGGACGCTCAGCTCGGAGAT 1495971 29 100.0 32 ............................. GTTGTGCGCGGTCAGAGCACTGTGATTGACCC 1495910 29 96.6 32 ............................C ACGGATATGAAGTGGGCCCTGGATTATGACTA 1495849 29 96.6 32 ............................C ATGTAGGGCTGGAAGTCGAAGATGTCCTTGTT 1495788 29 93.1 33 ...........................TA GAACGTGAATCCTACCTTCGGCTTATCTCAAGA 1495726 28 72.4 0 ....CA......CG...T....A-....A | ========== ====== ====== ====== ============================= =============================================== ================== 90 29 98.5 32 GTGCTCCCCGCGTAGACGGGGATGAGCCG # Left flank : TGCCGATGAGCTGAAATCTCAGGCTAAAGTGCGTGATACGGACGATACCTTGGAAGTGCTGGTGGTGCAGTCGGACGATGGTGGCCAGACCTACCGGCCACTGGGTGATGAATACGTGGATCTAATGTTTGAGGCTGACGCTTTAGAGAAACCTGATTGGAAACTGGCGAACGTGCTCGCAGGGTCTTCTATCCGTTTGCCCTACCAGTTTGCGGATAAGGGGTGGGCACCTAACAAGAATCCTTTTGACCTGGCCCTTAAGGCTTTAGAAACGAATCAATTTTCTGCCTGGCAACAGCATCACCTACTGAAAGGGGAGCTGGTGCTTCTGCTAGATACCAATATGGAATGTTCCTTAGCCGGGTACAGGTTGCGCTATTCGCAGGAACTGGGCTTGGAAGTTCTTCGGGAAGCAGATTCGGGTATGATTATCGAGGGCTAGCCGGCTAAAAGTAAAGTAAATTTCCTTGTTGTCTCGGTGTTCTACCATGTCAGCAAGT # Right flank : GTAAGCAGGCTGGTTAGCCTAGCGGGTGCGGGCAGGGGCAAAAAGCCCGTAGATTCCCAGTGCCCCCAGTGCTAGGAGGGCTATACCGAATGGAATGAAGGTAGGGGAGCTGTCGTAGCCTGCGATCATGAAGGTATCAGCAAGCCCCACGCCCATGTGCCAGCCCCACCCCAGAAAGAGAAGGAAGCAAGCGATAGCTACAGAAAGAGAACAGAAACCGATAGCGCGCTTGGTGCTGTAGGATGCCATGCCCCGCAACCACTCGTGCACGTTCGGCAGAGCAGCTAAAAGAAGCGCGACGAAAAAGCCCCACACAACCACGACAAGGAGGCTAAACTGGTTGGTCTCCTTCAGCAGGCTGTAAATCTCGCTGAGAGTGTAACCCGGGGCTGCAGCCAGCGGGTTCCACCAAAAGGCATGCAAACCGTAGTAGATAGCTAGCAACAACCCGAGCACACAAAAGGTAAGGGGCAGGCGGACGTCCGGGGTCGGCTTTCCCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGACGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //