Array 1 36385-32581 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCXW01000025.1 Bacteroides thetaiotaomicron strain bq_0049 Scaffold_0025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 36384 45 87.2 30 ...A.-...CA....T..-............................ CTTGCCGAAGTCGGAGATACCGTCCAAGCA A [36375] 36308 47 100.0 29 ............................................... GAGCAGCATAAGCATACAAATGGCTGAAA 36232 47 100.0 30 ............................................... AGCGTACGCAATGCGTCCGCCATCTTCGCG 36155 47 100.0 30 ............................................... AAGAACTCAGCTTGGCGCAAGACAAGAATA 36078 47 100.0 30 ............................................... TCTGAGTCGTTTCCGAAGTTCTCCTGAGTA 36001 47 100.0 30 ............................................... ATAATGGAAAAAAGCTACGAAGAGCTATCC 35924 47 100.0 29 ............................................... CCATCTTTTCTGGGGTGGCTCCCTGACCC 35848 47 100.0 30 ............................................... GTCTTATTCTTTAGAGTATCCTGTGCCCAT 35771 47 100.0 29 ............................................... AAAACCGGTTACATAACCAGGGACAAACA 35695 47 100.0 30 ............................................... ATCAGTTTCACTCTTTGCACTTGACTTCAG 35618 47 100.0 30 ............................................... AAAAGTGAATGAAGGTTATGCACTCGAATT 35541 47 100.0 30 ............................................... ATGGACGAATGCAGGGACGCCAATGGACTT 35464 47 100.0 30 ............................................... AAAAAAGGAGCTATCCCCGAAGAGGACATT 35387 47 100.0 29 ............................................... CGTCTGTAAACGAAATAACGTCTTGGTTA 35311 47 100.0 30 ............................................... TCAAGTAGTAGCGGACGCATTCGCCGAATG 35234 47 100.0 30 ............................................... AAGACTTGAAAGAGGAATATGAATCCTTCA 35157 47 100.0 30 ............................................... TTCCGGTTCTACGGGTGCTTCCGGTTCTGC 35080 47 100.0 29 ............................................... TTCATCGCATTTACTCCGAAAACGAATAT 35004 47 100.0 30 ............................................... TAACTTCCTCCATGAGGCCCACCGCATCGA 34927 47 100.0 30 ............................................... AAAAGTGGGATAGTGGTCTTCGCTGAATTT 34850 47 100.0 30 ............................................... ACGCCCGTAGAAAGATTATCCGAGTATTAA 34773 47 100.0 29 ............................................... CAAAGGAGAAAAAGAAAATGATGGAACCA 34697 47 100.0 29 ............................................... GCTTCAATGATTGCGGACACCACCGATCA 34621 47 100.0 29 ............................................... ACAAACGGAGAATTATCAATCAACACACT 34545 47 100.0 30 ............................................... TTATGCGGTGGAGTACCTAATTGCCAAATA 34468 47 100.0 30 ............................................... GAATGGCGGGTCGAAACATTCCGCAAAGGC 34391 47 100.0 30 ............................................... TGCATCTCGGATTGAACCGCATGGAACGGA 34314 47 100.0 29 ............................................... CTAACATTGCCAACAAAATTGCCAACGGT 34238 47 100.0 30 ............................................... TAAATGAATGAACAGATATAACACCTGAAC 34161 47 100.0 30 ............................................... AGAAATCGTATTCCAAGAAGTGATCAGCAA 34084 47 100.0 30 ............................................... CCGAAAAACTTTGGGTGTGCTTTGAAACAG 34007 47 100.0 29 ............................................... GATACGTCTATGATGCTAATACGCTGTCA 33931 47 100.0 30 ............................................... ATGAAGTGATTAAGGTTTTGAACGGGTACA 33854 47 100.0 29 ............................................... CTAGTAACAGCAATGATCTATGCCTGCAA 33778 47 100.0 30 ............................................... CGGCAGCTTGTGGAAAATGCTTGGAATGCA 33701 47 100.0 30 ............................................... TCCCATCCGATTGATAACTGTTCGTAGACA 33624 47 100.0 30 ............................................... CCAAACACTAGTTCTATATGGATCAAACCT 33547 47 100.0 29 ............................................... ACGCCTGTTGTAACGTTGTCGTCCAGTGT 33471 47 100.0 29 ............................................... TTCATGATGAATTGATAGACGAAGTATTG 33395 47 100.0 29 ............................................... CACGAAGGAAGAAACCGCGAAAGAATACA 33319 47 100.0 30 ............................................... TATCGTTCCGTACATCATTGGTTTGGTATC 33242 47 100.0 30 ............................................... TTCCACTTCGTTAGCGACATACATATCGTC 33165 47 100.0 30 ............................................... TAATCTTCGTTACTTTGCTTGTGCTGAATA 33088 47 100.0 30 ............................................... TTGTCCAAGCGAAGAGCCAAAGAGCATCGA 33011 47 100.0 30 ............................................... CAGAAACACGATAGGAACAAAGCAAAGTAT 32934 47 100.0 29 ............................................... CGCTGCTTAACCAGCTTTCACAGGAACAT 32858 47 100.0 30 ............................................... ACTTCTGGGTACAAACAGTAATACAGGCGA 32781 47 100.0 30 ............................................... AGTATTACTTCCTGCGGAATTGACAGATCA 32704 47 100.0 30 ............................................... GAAGACCGGAGACGCTGCATACAGCATCTT 32627 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 50 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : ATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCGACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //