Array 1 2126430-2125459 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985808.1 Bacteroides sp. Marseille-P3684 strain Marseille-P4684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2126429 47 97.9 30 ..................................T............ ACGCAGTCAAAATCGGACGTGTTGCGGATG 2126352 47 97.9 30 ..................................T............ TGGAACTCATAATTCCACATGGAGGATTTA 2126275 47 100.0 30 ............................................... CATAAATGTTTTATCCATTCTTCATGGGTC 2126198 47 100.0 30 ............................................... GGTCAGACCGTTGACGACTTCCTCGACGCC 2126121 47 100.0 30 ............................................... ACGAGGACTACGAGAAGCGCATCCGCCGGA 2126044 47 100.0 30 ............................................... CAACGATTATGACGGCTACCGTAAGAGGCT 2125967 47 100.0 30 ............................................... ATCGTTCAGTATGGTGGAAAATTTCTAGTC 2125890 47 100.0 30 ............................................... CCTCGCTTCATGACCGCCCTGTCGGAGCGC 2125813 47 100.0 30 ............................................... CCTTACCGTGAATGAGGATGATTACTACCA 2125736 47 100.0 30 ............................................... GTATCCGGTCATTCCTCCGATGGTCGAACC 2125659 47 100.0 30 ............................................... GGTCGGCGATGTACAGGCGGTCGTCGAAGT 2125582 47 100.0 30 ............................................... GCGACAACATTCCAAGTTGTTACTTCTATC 2125505 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 13 47 99.7 30 GTTGTGATTTGCTTCTAAATTACTACCTTTGAGCCATCAGAGACAGC # Left flank : TATCTGGATCCTGTTTTCAAACATAAGCATAAATTGATTCATAATCAATCCCCAGTTTGATAATAGACATTGTCCAATTCTTTTTAAGATATCGAACTTTTCTTTTGTAATTGACGAAAAAAAAGAAGGTGCATCACTTATTACGACACACCTTCCTCATCCTTGCAACTCGTGCGCCCTATCTTAACAGGTAACGCACGGCATAGCTGTCAATACTCTCAAGTATCTCCTCGTGGTTGTGGTTCGTGTTCGTCTCCAACAGCGACGTCCGTTAAAGCTCTCTCCACTCAGTCCGTCAGAGCCTTATAGAGCCGATGGCTGAGGTCGAAGGCTGCATCGTGCCCGCCCTATGTCCAGTCGGTCACCAGGTGGATGGTGACGATGCCTCTGCCGCGTTGGCTGCCGCCCTGGAACGGAGCTCACTCGATCTTCCCGAACTCTAATTGTACTTTTGAGCTATCAGAGACAGCTTTTGTCAATCATGCTGTTGCGCGCTTCTA # Right flank : AGATTATATGTTATTCTCTGAATATAAACAAGTTAAAGGCTCTATTAGGAAAATAAAAAAAGCTGTTTCAAAGAAGGTGTGTCAAAAAGCGCACCTTCTTTTTTTATGCACAAAGCCCCGACTTTCACAAGCCGAGGCTTTGCTATTACCTAAAGATTTTGTATCTTTAAGCATTATAACAAAAATAATCTTATGACAAAGATACATTTTCGTCCTTACATTCCCAACCAAACAGTGCTGTTTCCTCAAAGAATCGATGAGGATATTGCAAAGAACGATCCGGTACGCATGGTTGACGCCCTTGTTGAGAGCCTGAATCTGGAAGGTTTCAGGAAGTTATATAAGGAATGCGGCCGTAGCCCTTACCATCCCCGAATGATGCTCAAGGTCATCCTGTACGCCTATATGAACAACATCTACTCCTGCCGCAAGATAGAAAAACTCCTCCACCGCGACATCCATTATATATGGCTGGCCGGGCACGAGAAACCGGACTTCAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTCTAAATTACTACCTTTGAGCCATCAGAGACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 2710887-2710531 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985808.1 Bacteroides sp. Marseille-P3684 strain Marseille-P4684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2710886 47 100.0 30 ............................................... CCTGCCCGCCTTCCGCACGACAAGGGCATC 2710809 47 100.0 31 ............................................... TTCCCCTCCGACGGACGAGAGAGCCGCGTCA 2710731 47 100.0 30 ............................................... TAGCTCTGTCGGTTAGAATAGATAGACTAC 2710654 47 100.0 30 ............................................... ATCAAGACACAATGTGTCACATCTATAATT 2710577 47 95.7 0 ........................G.A.................... | ========== ====== ====== ====== =============================================== =============================== ================== 5 47 99.1 30 GCTGTCTCTGATAGTTCAAAGGTAATCATTTAGAAGCAAATCACAAC # Left flank : TTGTCTCCAGTTGTGGCGGAAAATGAAAAAATCGGATTCCAAATGAAGCTGATGATATAAAAAATGATGAGTTCAAACGGAAAAATACAGGGACTGTCTGCCGAATTACTCATAATGATGGAATTAAACGACAGTCCCTACTCTTGGCATCCATCATTATAATCGTTACAATGCATATTGTTTGGCTGATGATATTATGGAACCTTATCGTCCATATGTTGATAGGTTGGTCTTTCAAATGTCTGGACGATATGATATGAGCAAAGTAGAACTCACGAAAAGTCAAAAAGCGGAGTTGCTGTCTATCCCTACGCTAGATGTGCAAATATCTGGCAAGAGGAGTCCTTTGATGATAGCTGTTGGGGCAGAACAGCAATTGGAACTCTTCTAGAAACAATAAATCCCACCTCAGAGTGGGATTTATTGTTTTGAAACAGCCTTTTTTTATTTTCCTAATAGGGTATTTAACTTGTTTATATTCAGAGAATAGTATATAATCT # Right flank : CGGCTTTTTTTGTGTCCGAACACCAAGCGAGCTGTCTCTGATAGCTCAAAAGTACAATTAGAGTTTGGGAAAATCGAGTGGGCTCCGTTCCAGGGCGGCAGCCAACGCGGCAGAGGTATCGTCACCATCCACCTGGTGACCGACTGGACAGAGGGTGGGTACGATGCAGCCTTCGACCTCGCCCACCGGGTCTATAAGGCTCTTGACGGACTGAGCGGGGAGAGCTTCAACGGACTGTCGCTGGTGGAGACGAACACGAACCACAACCACGAGGAGATACTTGAGAGCATCGACAGCTATGCCGTGCGTTACCTGTTGCGATAGGGCGCACGAGTCGCAACGATGAAGCCCCGACGGACAGTTACCGCCGGGGCTTTTACATGAAATGTTATACCTTTGTGCCTAAAAAAGATGACAGTACTACATGATACAGGAGAAGGTTGGAATGGCTTTGTTCGAGAGCTGATTGAAGCCAAAGAGAAAGTGGAGCTTCAGCATGA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCTCTGATAGTTCAAAGGTAATCATTTAGAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 3471855-3471501 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985808.1 Bacteroides sp. Marseille-P3684 strain Marseille-P4684, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3471854 47 100.0 30 ............................................... CGTTCATCCTGAAGACCTCCCTGCTGGGAA 3471777 47 97.9 30 .............T................................. CAAATGGGATTCCCCCTGAATCCTGATATT 3471700 47 97.9 30 .............T................................. CGTTTTTCATATCAAGTAATTTTTAAGGGG 3471623 47 91.5 29 G.........T........C......A.................... ATACGCTTATCCCTGTTTACTTCTACAGT 3471547 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 97.5 30 ACTGTCTCTGATGGTTCAAAGATAGTGATTTGGAAGCAAGTCACAAC # Left flank : TAAAAGAGTATGTTTTCTGAAAAATATCTACCAAACTATTTGCAGGATTCAAAATAATGCCTACCTTTGCATCGCAATTGAGAAAGCGATATCTCGAAAGCAAAACATATATGGTGGCTGTAGTTCAGTTGGTTAGAGCGTCAGATTGTGGTTCTGAATGTCGTGGGTTCGAGTCCCATCTGCCACCCGTAAGAAACGCTAATTACTAATAAAGTAGTTAGCGTTTTTTCTTTGTTCTCGCCCGGATGAACATGGTTCGGTTCAGTTTGTTTTGGCTCAGTTTGTTTTCCTGGGGATTTAACAAATGGCAGATAAATCTTTGCTATATGAAACATAAAGCCATAGATTATAAATCCGTTTTGTCTTTATTCCTAACAATAGAACTCTTTTGGAAACAATAAATCCCACTCTGAAGTGGGATTTATTGTTTTGAGACAGTCTTTTTTATTTTCCTAATAGGAGAGATAATTTGTGTATAATCAGAGAGTAATGTATAGTGT # Right flank : TAATCATAGATATAAAAGAATTGAGTTTTTGTTGTTTCCTGCAAGGGAAAGTTTGTATCTTCGCCAAATTCATTGCTAAAATTTGCACTTAGGAGAATACTATGAATGAAAAGGATTTGATATTGAAGTTGAGAACGGGGTCGGTTTCTGCCTATAAAGAGCTTTATGAGCGTTGGATTTCTAGATTATATGCTTTCATTTATCATTATGTGAAGTCAGAAGCTGTTACAGATGATATTATACAGGAAACTTTTATACGTATTTGGGTGAATCATGAATCGTTGAACCCTGATTGTTCATTTAAATCCTATTTGTTTACTATCTCATATCATTTGTTATTAAAGGAGTTGCGCCGACAACTAAAAAACCCATTGTTAGAAGAATATATAGAATATCAAGATCAAATATCCACTTCGGTCGATGGTATAGAGGACGATTTTGATCTGGAACGTTTTCGTATGTTGCTTATTCAGGCTAAGCATAAATTGTCTCCTCGTCAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTCTCTGATGGTTCAAAGATAGTGATTTGGAAGCAAGTCACAAC # Alternate repeat : ACTGTCTCTGATGTTTCAAAGATAGTGATTTGGAAGCAAGTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 3606999-3609206 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT985808.1 Bacteroides sp. Marseille-P3684 strain Marseille-P4684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3606999 36 100.0 31 .................................... ATAGTTATTAATCAGCGGAGTGAATGCATTC 3607066 36 100.0 30 .................................... CATGGCTTTTCAAGTAAGATTCAGTTTTTA 3607132 36 100.0 30 .................................... TACATACTCTACACGGTACAGGATGTTGTA 3607198 36 100.0 30 .................................... CTGGATAGCGAAGAACGGAATCGCGGAAAA 3607264 36 100.0 29 .................................... ACGCAAGCGAGCGAAAGCGGCAGTGTTTA 3607329 36 100.0 29 .................................... GTTTGAGCCAGCAGAAGCGACACCAGCAA 3607394 36 100.0 30 .................................... ACGCTACGGCGGCACAGGCTACGCTGTCTA 3607460 36 100.0 30 .................................... TCGTTCCATCTATGTTATGCAGTAAATGCA 3607526 36 100.0 30 .................................... TCAAATTCTTGATTCATCGCGACCTGTCGC 3607592 36 100.0 30 .................................... TACCCCTTTTCGATTCAGCAATGGACTATC 3607658 36 100.0 30 .................................... TCGGCATTTTCGTAAGATTTCATAATTGTA 3607724 36 100.0 30 .................................... TATCCCAATCCCGTTCGGCTAACCGTCGGA 3607790 36 100.0 30 .................................... TAATGCAAGTGGAACATCAACCTATGAGTA 3607856 36 100.0 30 .................................... TTGGCGAGTTCGCCCTGGCACGCGAACTGG 3607922 36 100.0 30 .................................... TCGTCGGCTGAACATCATAGGCATGTTGGT 3607988 36 100.0 30 .................................... CAGTCGAAGACCATCGAGAGCATCTTCGGA 3608054 36 100.0 30 .................................... TTGCGCGGCTTCGGCCTTGGCGGCAATTTC 3608120 36 100.0 30 .................................... AATAAGGAAGCAACAATACGTTAGGCGTGG 3608186 36 100.0 29 .................................... CGGTAGTAAAACAGCCAGGGGCTGGAGTC 3608251 36 100.0 30 .................................... TTTATCTAGTACATTAGCATTTTCATCTAA 3608317 36 100.0 30 .................................... CTCGTAATGCCGTGGACGCTCCGCTCTCTA 3608383 36 100.0 29 .................................... ACATTATTTACAGGTAGTCCGGCGTCAAG 3608448 36 100.0 29 .................................... TTATCAATTATCAGAGAACGTTATCCGGA 3608513 36 100.0 29 .................................... TATATCATATTCTTATACTCTCTACAGTA 3608578 36 100.0 30 .................................... AAGGGGTTGCGCGCCACACAGACCGACCCC 3608644 36 100.0 30 .................................... TTGTTTTGATTCGCGTTTAAAATCCACGTA 3608710 36 100.0 30 .................................... TCTTTCAACCGGGATACCTGATTAGAGGCT 3608776 36 100.0 29 .................................... TGTCGGTCAAGCGTCTGCGCGACGAGTAT 3608841 36 100.0 30 .................................... TGACACCCTCCGAGCTCGAGTGGCTCAGGA 3608907 36 100.0 30 .................................... CCGGGGCAATGTCAATAAACTGAATCAATA 3608973 36 100.0 30 .................................... GCAAGGTGAATATAAAAGAGTTGTGACTAT 3609039 36 100.0 30 .................................... CTATAGATAAATGGTCAGCGGCGGCCCAAC 3609105 36 97.2 30 .....................C.............. GTCGCGACAAATCATAAAGGCGGACGCGTG 3609171 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.9 30 GTTGCGGTTTGATGTAGAATATTGATAAGGAACAAC # Left flank : TCCATCACGATGGCCTCTTTGGCCAAATGCTACATCAATGAACACAAAACACTCAACTTACCGTCGGTCAAATGAGCGAACTAAGACTTAATGCATATCATATCATGTGGTTATTTGTAATGTTTGACCTGCCAACCACAACCAAGAAAGAACGAGGATTGGCAGCCAAGTTCCGAAAAAGCCTGGAAAAAGATGGTTTCACACGCTTTCAATACAGCGTCTACATCCGCTTCTGCGGGTCTTTGGAAAGTTCCAAAGTCCATATCAAACGGGTAAAATCATGTGTTCCGCCTAAAGGCTCTGTAAGCATTTTGTCTGTCACAGACAAGCAATACTCCAACATCATCAACATTTGGGGTGAAATTGAGAAAAAGGCTTATCCGGAACCACAACAACTAGAATTTTTTTAATATTTTTGTTTCCAACAAAGCTCTTCATTTCGCAATTGTATCGCCATTATTGAACTTAATCATTGATTATGAATCAAATAAAGCGCATAC # Right flank : CTAGCTTTACATACCAATATGAACCTAAAGTATCTACAAACGATGTTATTGGCTGGCAAAACAGTCTATATTTTAGACGATTTTGAAGAAGCTGCAGTACGTCTCATTTATGAAGATGAAGTCACTAAGGCTTATCTCAAGCATAAAGGGAGAAAAGAAGTTAGTATACCTCAATCTAACAAAACTGTGTGCGAAATCATTCTTGCAGGCAAAGAGATAACAAAATTTGAATATGAAAAATACGAATGAATCGCTACAAAAGCACATGCCGGACAAACTGACCAGACAGATACTGCCTGCATCTCCTCCTTCCACTACGCCCCAAAGTGAAGAGGAAGACGGTCGGATATAAAAAATCCCGCTACAACCACAAAAGCCATAACGGGATTATCTTATCCAGGAACAGTCCGGAAGAGGAAATGTTCACCAGCCTACTTCTGACGTATAAATATATTGATGGGAGTACCGCTCAACGACCAGCGTTCCCGCATCTTGTTTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTTGATGTAGAATATTGATAAGGAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //