Array 1 520878-521434 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWNY01000001.1 Varibaculum vaginae strain Marseille-P5644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 520878 37 100.0 28 ..................................... TCCGCCAGGCTATCCCGGACGGGATACC 520943 37 100.0 29 ..................................... AGATTAGCGAGGTCGTTGGTACCGCCTAA 521009 37 100.0 28 ..................................... CTCGAGAGTTGGCGCAGTATTTACCGTC 521074 37 100.0 28 ..................................... GGAGCATGAGCACATTAACCACACCCTT 521139 37 100.0 28 ..................................... ATGAAAGGGGAATATTTTATATTCCTGG 521204 37 100.0 27 ..................................... GTACCTCTGAGTAGTAGCAGGAGACGA 521268 37 100.0 28 ..................................... TATCCAGCCTTTACCTACCCAGTCACCA 521333 37 100.0 28 ..................................... CTCCGCTGAGTATTCGGCGGCTACATGG 521398 37 97.3 0 ...................................A. | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 99.7 28 CAAGCATATCAGGGGTAAATAAGAACTGAATCCCAGC # Left flank : AGTAACCAGTATCGCGATGATGGTATCGGTATTCCTGCCGCTTTTGAGGATCTCGCTCAGTTATTTGGCCTTTATATAGAGAGTCAGGTAAGAAGCTTTTCTCCTCCTAAATGGTTTAAGTAGTTTCTATGAGTAAGAAACCCATGTGGTGCCTGGTGATGTTCGATTTGCCGGTGGATACCGCCCGCCATCGGCGCGAAGCAAACGCATACCGGCGAATGCTTTTGGACCTAGGGTTCAGCATGGTGCAGTTCAGTGTCTACGCAAAGTACACTCCGGCAGGTTTAAGTGACGTATCCACCATCGGCCAAGTCCGTGCCGGTATTCCTCCCGAAGGAAACGTTCGTATGATCTTCTTAACGGATAAGCAATGGTCTCGGACGTTTCATTTTTCCAACGGAACCTCTAGCAAAGCAGAGGAAAAACCGGAACAACTATCAATTTTTTAAGGAGAATTTGGGTGCAAAACCCTATATAAGCAGGGATTATTTACCCCTGCT # Right flank : CAGAAATCGCGGGGGATTCCGAGTCAGAAATGACAATTACTGATCCCACCTTGATTAAGGTTTATCAGGCGTTATTGACACCGATAGAACGGATAAGTGATTAGACCGAGGGGTAAAAGAGGGTCGTAACCAAGGTTAGATCTGGCAGGCAATCGGTGAGAATATTGATATGAATCGGCAAGATGCAATGAAAAATTTCGCTGCCTAAGTAACTTACTGGCCCGTGATGTGGAGCCGCTAGGAAGGGGAAGTGGGGCGGCGGAGACTCTTGTCGCCTCCGCGGTGCTCGTGCGACTTACGTCCGGTGGGGGACGCTAATCAATCTGATAGAGTTCTAACCGTCTGTTCAGGTGACTCTAATCACCGCTGGCGGACGCTCCATTTTTCAAAGTTGAGGGTTGAGATAGGTCATTGAGGGGTGACCTGAAGGAGAAATAGCGTAATGAAGCAGCATGCCAAAAAACTGACGGCCACCGGATTTGCCTTAGCCTTGGCGGGGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCATATCAGGGGTAAATAAGAACTGAATCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 55529-59244 **** Predicted by CRISPRDetect 2.4 *** >NZ_UWNY01000002.1 Varibaculum vaginae strain Marseille-P5644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 55529 29 96.6 32 ............................G AAGCGTTTCTAGAGGCTCACGCGCACCGTTGG 55590 29 96.6 32 ............................G GATCGAGCACCTATCGACGATAGACCACATGA 55651 29 100.0 32 ............................. CTAACCGCAGACCCGCAACTACGCTACACAAA 55712 29 96.6 32 ............................G AACGGACCCGCCCTACAATCCCTCGGCTTTAG 55773 29 96.6 32 ............................G GTCTGGAGATGCGGCGGGGTTAGATTTGCCTG 55834 29 96.6 32 ............................G AGCGAGCGACTAGTTTTCAGCTAGATACTGAA 55895 29 100.0 32 ............................. AAAATCCAACGCCTTAAAGCCGCGGCGGAAAA 55956 29 100.0 32 ............................. AGGCGCAAATAGACGCGGAAGCCGCCGCGCTC 56017 29 100.0 32 ............................. ATCGAGGTCACCCTTATCGGCTTGGTCTATCC 56078 29 96.6 32 ............................T AAAAGAAGTAAGGGACGCGGTAACCACTATAA 56139 29 100.0 32 ............................. GCTTAATAGACGCTAGTTCCGCGACTTTATCC 56200 29 100.0 32 ............................. GCGAATAACATCAACCTCGCTGAGAACCTCCA 56261 29 100.0 32 ............................. CCCACATTCCTAAAATACGGGGTGCACGGGTG 56322 29 96.6 32 ............................G TTTTCTAGTTGTCCCCATGTGTCGAGGTCTTG 56383 29 96.6 32 ............................T GGACACCGTAACCCTGCCTGCCGCCACCGTCG 56444 29 96.6 32 ............................G GCGCGAAGCTGGTTTAGGTCTGCCATTTTTAG 56505 29 100.0 32 ............................. GAGTTCGGACAATTCGACGAAGACGACCTAAA 56566 29 100.0 31 ............................. TACAAGGAGCATCACTGATATGAGCGTAAAA 56626 29 100.0 32 ............................. ACAAAACCGGGATTATCAGGCTACTAGAGGAA 56687 29 96.6 32 ............................G GCTTTTGGCCAGGCAATGATCTTTTCCCTGTC 56748 29 96.6 32 ............................G AAAGGGCTTAACCTCGCGCCTTAGTGCGGGGT 56809 29 100.0 32 ............................. GGGGGGCATGACGGAATAAACCGGCATTAGGG 56870 29 100.0 32 ............................. GTCTACAAAATCGGGCAATTAGTAATTTTTCA 56931 29 100.0 32 ............................. TATTGGGGGGACAGGAAACCGAACCCCGCTAA 56992 29 100.0 32 ............................. CGGGACGGGCGCTTAACGCGGCAAGTCTTTAA 57053 29 96.6 32 ............................T AAAGTTTTTCCAGGTCTTTCACCCAGATACGA 57114 29 96.6 32 ............................T GACCGGAACCAACCCCGCCCCAACGTCACCAA 57175 29 100.0 32 ............................. GTCAATCGACACACCTAACGCCTCTGCTATAG 57236 29 100.0 32 ............................. AAATAAAACAATGGAAACCCGCCGCTGCGATA 57297 29 96.6 32 ............................T GCATATGCGGCCCGGTCACGTTACCAGTCGCG 57358 29 100.0 32 ............................. GGACGCGGCGAAGGCAGAATCTTCCACAAAAT 57419 29 96.6 32 ............................G AAATGAGCGAGCCGAAACGGTGGATCAAAATA 57480 29 100.0 32 ............................. CGGGGCGGCGCGCTTTGCTTTCGCGATCTCAA 57541 29 100.0 32 ............................. TCGCGGGCGTAGACCGGGACGCGCTAGATAAT 57602 29 100.0 32 ............................. CGGAATCAAATCATTGTAAACACCAAAGTAGG 57663 29 100.0 33 ............................. CAGGAACATTTATAATCGGGCAATCGCGCCTAG 57725 29 100.0 32 ............................. ACGGCTAAAACGGTCATTTTGCGCCGCCTATG 57786 29 100.0 32 ............................. GTGGGGCGAGTTGGTGGTGAATAGCGTCCTGT 57847 29 96.6 32 ............................T GGTACATTTTTGACGGAGGTAGGACATGGCAG 57908 29 96.6 33 ............................G CCGCGTTGCTCTGCTAGGGCTTGGTAAAACGCG 57970 29 100.0 32 ............................. CCTCAGACTTTTAGAGGTGGAGCGGCTCGAAT 58031 29 96.6 32 ............................G CCCCGGCGACCGCGAAAAACCCCAAGCGCGGA 58092 29 96.6 32 ............................G CCCCGGCGACCGCGAAAAACCCCAAGCGCGGA 58153 29 96.6 32 ............................T AGCGCTACGCCTAAACCCGTCCAGCGTGGCAT 58214 29 100.0 32 ............................. GGGTCGCTTGCGTTGGATGAGATTTATCAGGG 58275 29 100.0 32 ............................. ATTCCCGCCTCCAGCATCAACGGGGTGCGCGC 58336 29 100.0 32 ............................. GCAAGATTATCTAGCGCGTCCCGGTCTACGCC 58397 29 100.0 32 ............................. AAAATTCACGTCCACCGCTAAATACTCAATCT 58458 29 100.0 32 ............................. AAACTAGGATTCACCATCAGCGGGCAAGACTA 58519 29 96.6 32 ............................G TAGTGGACGCGCTAGCCGATAAGTTCGCGCCT 58580 29 100.0 32 ............................. CAAACTAACCCGCCCGCCAGCAACGGGCAAGG 58641 29 96.6 32 ............................G AATTGTGGACTCGGTAGCGGTTTCAAGGTTCA 58702 29 96.6 32 ............................T AATCGCAATCACCACCGAATATGCCCATGCCC 58763 29 100.0 32 ............................. CCACGCATACCAATACGGGACAAGAGCAGACG 58824 29 100.0 32 ............................. GGGTATGGTGCGCAAGGGGCTTTTGGGTTAGT 58885 29 96.6 32 ......T...................... CCGCCACCGACGCCATGGTACGCTACAGCACC 58946 29 96.6 32 ............................T TTCTGTATTTTTAGGTGATTATCTGATATTCT 59007 29 79.3 180 ..A..G.TA..........T........T AAAGGAGGAAATAAGAATGAAAATAAATGCAATGCCCCTAGCATTTACCACTTTCGGTCTTTTCGTGTTGACCGAAATAGTTAGCTTTCCACCAGCGGTCACCGCGATGCTATCCCTAGCTGTAGGGGTTGGCGGGGCGTCTGCCTTATTCCTAGCAATCCGTCAACATGGCTAAAAGTA 59216 29 89.7 0 ..A...............T..T....... | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================== ================== 59 29 98.0 35 AAGTGCCCCGCACCTGCGGGGATGATCCC # Left flank : CGAGGCGGGGGAGACTCCGTTTTGATGGTTTTAATCTTAACTGCCTGCCCTCCGGGTTTGCGGGGATACGTTACACGCTGGCTTTTAGAGGCGTCTCCGGGAGTTTTCGTGGGGAGGTTATCTGCCCGGGTAAGGGAGAACCTGTGGGATTTGGTGGTTGCGGAGCGGAAACAAGGTAAAGCCCTGCTGATATATAGCACTAATAATGAGCAGGGTTACGCGGTGCGCTCGGCTGGGCATAAATGGAATCCAGTGGAACTCGAAGGAATGACTTTGCTGCAACATCCGGAGCGAATTAGGTCTGATAGTCAGACAGGGGAGGGGAATGTGCGAAAGCCGGGAGCGTGGCAAGGGAAATCTAATGGTAAAGAAGGGTATGGCTGGTCAATAGCTGCTAGGCGCCGGAAAATGCGTAGGCGTAAACCCTAATATTCTCGGTAAGTACCTATAGGATGGCTATAGCGGCGGATATTTTGGATCGATATCCCAGCTCATCGAGT # Right flank : CGCGTCCTGCGAATCAGGGTCATAAGCTACCCGAAAAGACTCCCACTTGTGGAGTTAATCCGAATGCTGTCCATAATCAACAATGTTCGGCTTGAAATGCCAGCAGCAGCGAATAATCGCTTTAAAGGACGAACTCGCACTAATACTCCATTAAGGATGAATGCCAATAATGTGGCAGCTAGAGCGCATAATCCCTGAATATATGTAATAGGACTGTTCTTTAGGGAAAGTAAAAAAGAATACCCCATGGGTAGCCTCGGCGAGGGGATATCCCCCGGGGTGGCCGGGGATAAAACTGGAGAAAGAAGTTAATGTGCTATGGCTTTAATCATTAGCTGTTGATTAACCTTTCAATCGCTATTTTAGCCTGGCATGCTTTGCTGGGCGCAGGCACAAAAAATAAATGAAAGACTGACTCTACTAACAGATGGGGTAGTTTATCTAACCCAAAGAGGAAAAAATTATTATCTAGAAATGCAACTGTTAGTATCCCGGTGTCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTGCCCCGCACCTGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //