Array 1 441695-442183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFB01000011.1 Porphyromonas macacae strain COT-192 OH2631 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 441695 36 100.0 29 .................................... TCAGGCGTTGCGCAAGATAACGGGTGCGG 441760 36 100.0 29 .................................... GATATTACCGTAGACTGGTTCGGCATCGT 441825 36 100.0 29 .................................... TATGTAGATTTCGCGCACGTCACCGGTAT 441890 36 100.0 29 .................................... TTGTTTGCCGTCTCTGGGTACCCACCCCG 441955 36 100.0 28 .................................... CTGTCCCGTGCCTCCAGCTCGCCATTAC 442019 36 100.0 28 .................................... ATCCATGCAGGACGATCATCAAATGATT 442083 36 100.0 29 .................................... TATGAAGCAAGCCAGAGCACAATATCAGC 442148 36 86.1 0 ........................G.....A.T.GG | ========== ====== ====== ====== ==================================== ============================= ================== 8 36 98.3 29 GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Left flank : TTTAGATTTGTTCAAGGATATTATCGGGTATTTATGAATGATCAACAGGGTGTCAAGTTACCCTCAATAAGTCGTTAATTATGCTTATTATAAGTTATGATATTAAAGACGATAAATTAAGGAATCGTTTTATGAAGGAGCTTGTAAAAAATGGAGCTATCCGGTTGCAGTATTCTGTATATGAGTTTAATAATAATTCGAGGTTGGTTACACATATACTTGCACTTATAGAGATGTCTTTTGCTCCCAAGTTTACAGCAGATGACAGTATCGTCATTTTTGAAACGGAAAGAAATAAACTCATAAAGTATGGTAATGCTATCCATCGAGATAAACCCGTTTGTTATTTCTGATATAAAGTTTTGTTAATCAGTTTTTTATAGTTTTTTGAAGCAAGGAGGGGGGGGATAAAATGAATTTCTAATTCGTAGAATAGACTTTTTAACTTGTTAAAATACAGAGAGTTTCTTATCTTTGTTTTGTCTTATTGCAGATTTGCT # Right flank : GAAGATGCAGTAGAAAAGTATAATGATGGTTTTTATTCAAAAGCTATCATTATATTTGTTTAAATCTATCGGTTTGAGTATTGTATATAACCATGGGAAACGATAGAATATATCGCGAAATTTTTCTTTTGAGAAAATAGATTGTTAGTGTGATTTTCAATAATATTTTAAATCTAAAAAAGTATAGACATGGAACTGCCCTTTTCAGAATCCTACCGCATTAAAATGGTAGAGCCGATCCGAAAAAGTACACGTCAGGAACGTGAGCAATGGATCAAAGAAGCCAAGTATAATCTTTTTATGTTGAAGAGTGATCATGTGTTTATCGATTTGCTTACCGACTCCGGCACGGGAGCCATGAGCGACAAACAGTGGTCTGAGTTGATGTTGGGAGATGAAAGCTATGCCGGCGCACGCTCTTATTATAAGATGAAAGCTGCCATCAAAGACATATTGGGGTTTGATTATTTTCTGCCTACCCATCAGGGACGTGCAGCAGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 931487-926936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFB01000011.1 Porphyromonas macacae strain COT-192 OH2631 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 931486 30 83.3 36 ....C.....G.G.A.T............. ATTCAGGCTACCTCCCTTGACTGCTATTGGAAGCGA A [931469] 931419 30 93.3 36 ............G.T............... AATCAAGTACTTCTTTTCTAAAACCACCTATCAGAG 931353 30 100.0 37 .............................. GATGTCTTGCAGGAGAATAACGACCTTATCCTCCGTG 931286 30 100.0 37 .............................. CTTAATCCCCTTTAATCCTATTGTCTTTAGCCAGGTA 931219 30 100.0 38 .............................. TGATTGCGCCAACAGTTATGATTGGCATAGCGAAGCGC 931151 30 100.0 37 .............................. GAGAATTGTCGAATTATAACATGACTGGAACTTGGCT 931084 30 100.0 37 .............................. CATCAGATTAACCTTGCCGTCCAGCTCCAACATACGA 931017 30 100.0 37 .............................. TATCTGGCTCTGGTAGACTAACATTTCGTGATAATGA 930950 30 100.0 36 .............................. AGAAGTTTCGCGTACAGGGAAACGCCGAGGAGCGGA 930884 30 100.0 41 .............................. AAAGTGGGCGTCCTTGTTGGCTTACGCAGTAAGCCTGGGAA 930813 30 100.0 37 .............................. TCGGCTTTTGCTACCTCAGACCTATTTCAGGTAACGA 930746 30 100.0 35 .............................. TTAAAGTTGAGTATAGCGTTGACCGTCACGATAGA 930681 30 100.0 38 .............................. CGCACCGAGCGCAACGATGCCGGTTACAATCAGCCCGA 930613 30 100.0 36 .............................. TACCGCAAAGCTCAAAGCCGCGCTCAAGGATCCGTT 930547 30 100.0 35 .............................. CTGCAAAGCCGTTTGCACTCGCTTTTATATTCCAT 930482 30 100.0 36 .............................. CATGATGCCCCAGTCTGTCGCCCCTGAAATGACTTC 930416 30 100.0 37 .............................. CCCGGAGGGCAAGATAAAGCCCTTTAACGCCTTTCTC 930349 30 100.0 34 .............................. TCGCATCATATAGTGGAGTGTCTACATGTCCACT 930285 30 100.0 36 .............................. AGCCCCCGGTTTATCGTCGTGGACACGTTGCAATAT 930219 30 100.0 36 .............................. GCTTTTGCATGAGGTTGTAATACATTCCGGTAGAAC 930153 30 100.0 35 .............................. CGCTCGTACTCCTTCGAGCTTATACCTCCCATTTT 930088 30 100.0 36 .............................. ACAACTTCTGCGCTGTGGGCGAACAGGTGTTAAATG 930022 30 100.0 39 .............................. TGGCGCTGTGCGGTATGTAACTAAATATATGCGCAAAGA 929953 30 100.0 36 .............................. CCTCGTTGGCGGTAAGCCTCGTTCTTATCATTTGCG 929887 30 100.0 36 .............................. TATTCAAGGGGTATGTTAATCGAGATACATTCCTTT 929821 30 100.0 35 .............................. TACGAGGGAGATATAGTTTCTTCGGGAGCCACGAC 929756 30 100.0 38 .............................. TATGGCGTACTTATTCGTATCGACAACACGGTCTATCT 929688 30 100.0 41 .............................. GAAAGGGCAACTTTCTGATACAAGAGCCATCTCCGCCAAAT 929617 30 100.0 37 .............................. TCTGTGTAGCGATAACATACAGATTCGCTGCAGCATC 929550 30 100.0 36 .............................. GAAGTCTGATGCTGATTTTAGAGATAAGTTAAATGA 929484 30 100.0 38 .............................. ATGCAGCGCAGTCTGCGCGAGGATATATTCGTATTCTC 929416 30 100.0 36 .............................. AATACAAGGCTTTCTCCTCGAAGTTGATAATAACAT 929350 30 100.0 35 .............................. CTTAGCTTATTCTATTGCTGAAGCAGCTGACCTAA 929285 30 100.0 37 .............................. GACATCCTTAGTACTCTTTCCCTTCGTATGCTGGAAT 929218 30 100.0 36 .............................. GTATTGAATAGGCTGCATGCCAATATGTCCAAACTC 929152 30 100.0 38 .............................. GCTCCTAATTCATCTATCAACCATTATTGTGATGAGCA 929084 30 100.0 37 .............................. GGATTATCAGTGGCAACATGAACCGGTCCTTTATGGT 929017 30 100.0 35 .............................. TATTTATAACAGAAATGATGGGTTACCCTTTAGAG 928952 30 100.0 34 .............................. AACCGCTCACCGAAATCACGTGCGCGTTTATAAG 928888 30 100.0 37 .............................. ATAGACTATCTGCGCAAGTATTACCCCGGACGCAGAT 928821 30 100.0 37 .............................. AAAACCGACAGCCCCGAATTACATATTCTTCGCTCGG 928754 30 100.0 36 .............................. TACTGAAAACATCGGATTCGATACCAAAAAGATGAG 928688 30 100.0 37 .............................. TATAAATATGAAATATAATTATGAATTAATGCCTGAA 928621 30 100.0 36 .............................. AATCGTAAATTTTATTAGTCATGTTACCACTCGCTT 928555 30 100.0 35 .............................. AAACATGAAAACTAAATCACTCATTATCTTAATTG 928490 30 100.0 36 .............................. GCCATAATTCTATATGATCATTCAATGCTTTTCGAA 928424 30 100.0 36 .............................. TATTTTTTTATTACGTGATGGACAAACGATAGCCTA 928358 30 100.0 37 .............................. CTTGTACCCGAGCTGCTACCACTCCACTACCGAACAT 928291 30 100.0 36 .............................. TGCTGTGAGGTACGTCACTAAGTATATGCGTAAAGA 928225 30 100.0 36 .............................. AAAACTGGTATCTCAATCTGGCGACACCTCACATAT 928159 30 100.0 37 .............................. CGGTATTTCTACCATTACCTGTCCGTCCGCTCCATCA 928092 30 100.0 36 .............................. ACTACCTTTTCCCCATTCAAAGAAAGAATTACCCCC 928026 30 100.0 36 .............................. ACTATCCACAAGAGCTGTAACCTTACCTGTTCTGGT 927960 30 100.0 37 .............................. GTTATGCGGTGGTGCGTAATAAAGAGATGGTTTACTA 927893 30 100.0 38 .............................. TTTATATTTATTGTTTCCATATGTCATATACTTATTAC 927825 30 100.0 36 .............................. TATTGATAAAAGTGGAAAGTTCGCAAATATTACGGA 927759 30 100.0 35 .............................. ATTGTTGATTTTGGCAATCAATTCTTCAAGTTTCG 927694 30 100.0 36 .............................. CGCCACTTTTTTTTCTCGTTGTCCCGGTGATTTTGT 927628 30 100.0 36 .............................. ATTTGCGCGACGGTTCGCACTCCGTCCAACTGCCAT 927562 30 100.0 36 .............................. TTTCGTGTCCTCAACCCAACGTGTTCCGCCCTTGTG 927496 30 100.0 37 .............................. TGTGAGATACCTCTTTTACGGGTTCAGCCTTGTTGTT 927429 30 100.0 36 .............................. TCGTAATGAATCGTGATGGTTTTTCATTACTCGCAA 927363 30 100.0 36 .............................. AGGTTACGGGCTACAAGGTTTGTGAAGTGTTCGCAA 927297 30 100.0 37 .............................. GCCCTGACAAGCGAGTGAAAGTAGACACGGACAACGG 927230 30 100.0 35 .............................. GCTGCCATCATCATACCCATACGCACGCCATCGGC 927165 30 100.0 36 .............................. CCGTAGTGCTCAAAGGAGCTGCGCAGAACGTTTCAG 927099 30 100.0 37 .............................. ACTATCAAGGACAAAAGAATGTTGTGCGAGTTTCTTC 927032 30 100.0 37 .............................. CTTTATTTGGCCAACTTTATTAGCGGCGGTTTTTGTT 926965 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 69 30 99.7 36 GTTTTAATTCCAATCTGGTACAATTGAAAG # Left flank : GTTGTCTTTATATTTATCTAAAAACTCTTCTGCACTTGAGAAAGCGATCTGATTGATGTAGCGTTCGACTTCATCCTCCGTCATACCGATACCCTCGTCGCTCACCGTAATGGTCTTTGCTTTCGGGTCGAAGCTCACAGAGACTTTCGGAGTGCCGATATCTCCTTTTACTTCGCCTCTGGTTGCCATGGTTTTGAGTTTTTGCGTGGCATCTACGGCATTGGATATAAGCTCACGAAGGAAAATATCATGATCGCTGTAAAGAAACTTCTTGATAATAGGGAATATGTTTTCACTTGAAACCCCGATGTTACCTTGTTTACTCATTGTTTTTGAAAATATTTTAGTTGTTTTTGAAATCTTTTATTACAAACAAAGTGCCACACATGCAAGAGTAAATCTTCAACTGACATTCTGACCGATTAATATCCCAATTAAGCCTAAAAGACAGTTGATACAATTTAAAAAGTTATTCTAATGTCTATATTCACAGCCATCCA # Right flank : CCGCTAAAAACATACTCGAAATTTACGAAAACAAAGGCTTTTCACCAATTATTTGATGATTTTTTTCGTTCTTCAAATTGTCGATCTCTAATCCTATAAAAAGACTTAGGTTACGACAACATATCTATTACATTGATTATAAAGCATTTCAAAGATCGCCAACATATTTTTATCTTCTTTTAATTATGAAATTGCAGAGATCGACAATAAAGAGGCTAAGCTTTATTCATAAAAACACCGAAGTTGAAGCTCTTTCTCGTCCAATAATTTCTTTCTCTAACCAACGTTCTTGTCTGGAGGAAAATATAATCAGACTATCTTCATCATTATCCATAAAATCCTTTGCCAAGGATTTTAATTCTAACAGTTTTACCTCAGACAGTTCTCCTTCAAAAACGGAATTTTGAATCCAATTAAGATATTTTCTACACAATTTAAGCATTTTTGCCACACGCTTTTCACCAACATCATAAACTAAAATAACATACATTACCAATACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCAATCTGGTACAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //