Array 1 72196-73351 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000048.1 Clostridium tetani strain 202.15 contig_0048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72196 35 80.6 30 A.A...A..-TG.T...................... AGCACAGGAAATATATACAGCTGCTAAGAG 72261 36 100.0 30 .................................... AATATAAAAACAAAAGAAGGGAAAATAGAA 72327 36 100.0 30 .................................... ATATCTCCACCTCCCTTAAATAAGATTCTT 72393 36 100.0 30 .................................... TTTAGACATATGACCTTCACCACAAGCACA 72459 36 100.0 30 .................................... GGAGCAGGTATAGTTACAGCAGCGAATATA 72525 36 100.0 30 .................................... ATTTAATTGCAATAGCAAAATACCCAGAGA 72591 36 100.0 30 .................................... CATTAGCTTTAGAACTTATAGAGAATTAAG 72657 36 100.0 30 .................................... TTTAGACATATGACCTTCACCACAAGCACA 72723 36 100.0 30 .................................... GGAGCAGGTATAGTTACAGCAGCGAATATA 72789 36 100.0 30 .................................... ATTTAATTGCAATAGCAAAATACCCAGAGA 72855 36 100.0 30 .................................... CATTAGCTTTAGAACTTATAGAGAATTAAG 72921 36 100.0 30 .................................... GGTTCTTCCTGAAGAAGCTGCAGAGCTAAT 72987 36 100.0 30 .................................... ATTAGATGGTAAAATAGCTAATAGCGTTAA 73053 36 100.0 30 .................................... AAGGTATGAAGTATGACTTCGAAGGTATGG 73119 36 100.0 29 .................................... TTAGACATATGACCTTCACCACAAGCACA 73184 36 100.0 30 .................................... TAAAAACCCTAATATTAATTTAGATCTATT 73250 36 100.0 30 .................................... GCTGTTAAAACTGGCTTAATTACATTAACT 73316 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.9 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : ATTCTTTCCTTATTTTTAAAGAAAGTATTATAAAGTTTAAATTCTTCCATAAGGAGTGGATCTTTAACCTTTAATTCTCTCATAATTACAGTTGCTCTGTCAGTAGAGAATTCCTCACTATAACAAAAAACATCGTAAAGCCAATCTTTTGAAGGTATTGGTTTTTTCATGTTAGAATACACAAGTATATTACTGGTTGTATCTCCTTTTTCTATATGATATTTACTCCAAAAGGCATTGTTATTTGTTAATTTAATAATTTTAATATTTTCTATATTAAGTTCATCTATATCTTTAGAAAAATCTTCATTACTATCATACCAAAATACTATATGACGTTTCTTTCCATTGGTTAATGGTTTTAAAAATAGTTCGTTTATAAAATTTCTTATTTCTTGTAAATTCATTTCTATTTCTCCTATCAAAATAAATAATTTGCATTCCTTCTAATTTATTTTAATTCCATGTAAATTATTATAACAAAAACAAACACTTTTTCT # Right flank : TGCAAAGTATGTTAAAAGATTTAACCAAATGTTATAGTTCCTAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 61155-60800 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000030.1 Clostridium tetani strain 202.15 contig_0030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 61154 31 100.0 36 ............................... CTACGTAAAACCATGCTCTACATTGCTAATCCCTCC 61087 31 100.0 33 ............................... TTATAGTCTTTTCTAGTTCTGTTGTGAACTTTT 61023 31 100.0 32 ............................... CAAGTGGAACATTTAAATTTTTAACGGTTCCC 60960 31 100.0 34 ............................... GGGATTATTTAGAGATAATGTTTGATGGAGGAAT 60895 31 96.8 34 ..............................A GACGAAATATTAAAAGTTGCTTGTAATTGCGACG 60830 31 77.4 0 ........................ACCCCAA | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 95.7 34 GTTGAACCTTAACATAGGATGTATTTAAATT # Left flank : GCAATTTTAATTTAATATCGAACCACCTTAAATTAATGCCCGAAAACCTTCGAGATAAACAACGGAAGTTTTCAGGCATTTACTACAAATATAATATTTTAGATGCAGAGGACAATTTAGTTTTAATGCTTGAAGGGAATTTTACAATAGTTTCTTGGATGACTACCTGCTCTATCTTTAAAGTTGGAGTAAAGAGCATTTACGTCTCCGGATAACGATTTCTAAGCTTTAGATGGAGTAAAAACTTTCTCTAAAGCTTAAAACTCTATTTATAAAAATAATCATATATTTATAATGTTATGTGATAAAATATAGACAAAAGTTTTCCCAGGTAATTTTAAATAAGAATGTAGCCTAAGGTATTGATTTAAAAGGGTTTATACCCTGTTTTTTAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTGTGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTCTTTCCAAATATCTTATTCTATCAGCGTCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTACAATGTAAATAATATTACTAAGCATAGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGCAATATTAATAATTTTATCCATTATAATTGCTATATCACCAAAGCTTGGGTTCATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTAAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAATCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAAAAGATAATAAGTGGAAACAAGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 37343-37633 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000051.1 Clostridium tetani strain 202.15 contig_0051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 37343 30 100.0 37 .............................. ACTTACCTTCCAAAGTAAATACTGGTAGCTTAGGTCT 37410 30 100.0 36 .............................. CTTCTTTTTCTAAAATGCCTATTATTAGCAATTTTA 37476 30 100.0 34 .............................. TATTTTAAAGCTGCTGGTATAGTAATAGGGTTGA 37540 30 100.0 34 .............................. GCAAATTTTTCTAAGTTAATCATTTTAGCCATTA 37604 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATATAGTTGAGAAGAGAGATATTTTAGAGTTAAAAAAACTAAATGTAAATGAACATCCTTTACTTGAAAAGGAATTAAATTATAAATATGCAGATGAAAAAGACAATGTGCGATATTATATGATAAAGTATGATATTAAATTTAAAGAAAATATGGCTACACCTATAGATTCAGGAGTTTATTATGAAGTTATTACAGTAGTAAAACGTAAAAATAAATGGCTAGTAACCACTGGTATGCATAAAGCATCATTTCATAATGATAAGCTAACAATAGATAGTTAGAGAAAATTTATAGAAATCTGTTAAATAAAAGTTATAAACTTTTCCAGGTGATTTTAATTATAAATGTATCTTAAAGCATTGATATATAAGGGATTAAGTGGTGCTTTTAAAGGTATTTTAAAAAAAGCTAAATCACCTGGTAAATTTTTAGGAAAATGTTGAAATATCAATGGTTGTATGGTATTCTTAATTTTAAGAAACTTTGATTTTACAGTG # Right flank : TCAACTAATGATAAATTAGTAGTGTTTAACACTGCTGATAGTGAAATTTCAGAAATTATAACGGCAGCTATCCATGACTCTAGTGGCATAGGTTCAGAAGATACGAGTTCTTTAAAATTTATGATTTTAGAAGGGGATTGGAATAATAAAGAAATTCCACAATGCTTTGAAGGAATTAAGTCCGCAGGTGAAAGTGGTAAAATACAAGTTTTAAGTAGAGGTAAAAATTTATTTACTAAAGATAGTATTTATTATTTAAACGTAGTTACAGGTAAGACTATAAGGAATCCAAGTAAATTTGTTAGTTCTTCTATTGCAGTTAAACCCAACACAAGTTGTATGTAGTAGTATTAACGCATTAGAAGGAAATGTTGTAGATATTGAAAAAGAATTAAATGCTAAAGCTAATCAAGAAGATTTTCATAAATTGGTTAAATTAGATAAACATGCAGATAGTATAATTAAGTTTATTTCTGAGCTTAATTGTACAGAATCCTTAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 7880-7390 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000053.1 Clostridium tetani strain 202.15 contig_0053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7879 30 100.0 36 .............................. ATCCGAGAATAATAAAATTTTTAATTGTAGATATTT 7813 30 100.0 37 .............................. TTAACCCACCATCTTCATTAATAGAAGGTGCATCTGA 7746 30 100.0 34 .............................. TAGAACAACTAAAATCAAAAGGATATGAGGTATT 7682 30 100.0 35 .............................. TATGCCTTATTAGGGTTATAATTAGGATTATTTTT 7617 30 100.0 35 .............................. TATACATAAAATGGGGAAGTGTTTTGATTTTTAGC 7552 30 100.0 36 .............................. CTGTTTAAGATATAAATATTGTCATCTTCTGTATAA 7486 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 7419 29 86.7 0 ...A............T.-..........A | T [7404] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGGGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAAAAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGGGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTTTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAATGATGGATAAAAATGAAGAAAAAATTAAGATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGGTATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2-2147 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000049.1 Clostridium tetani strain 202.15 contig_0049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2 36 100.0 30 .................................... TGCAAAGTATGTTAAAAGATTTAACCAAAT 68 36 100.0 30 .................................... TCAACTAAAGATATATCATTATCTCCTAAT 134 36 100.0 30 .................................... ACAAGTCTAATGTATAAGCATATATGTTAG 200 36 100.0 30 .................................... AATGGAATGGAAGATTCCATGACTAAAACA 266 36 100.0 29 .................................... TCTTAATTTATCACTAAGTGATGCACAAT 331 36 100.0 30 .................................... GAAGGAGATAACATAGTTGATGGTAAGCTT 397 36 100.0 30 .................................... TTCTACAATGTATGTAGAAAAAGAAGTTTA 463 36 100.0 30 .................................... AGAACTACACGAGGATGAGCTAGTACTTAA 529 36 100.0 30 .................................... TCTTTCTTTATACCACTTAAATTACCATGT 595 36 100.0 30 .................................... TTCTGCTTTTTCTTTGCTTAATCTTCTACT 661 36 100.0 30 .................................... CAAAAGTTGTATATAAACGGACAAGGTGTA 727 36 100.0 30 .................................... CAGGAAGGGTTGCTTGAAATAGATGATTCT 793 36 100.0 30 .................................... TAAAACTATAGCACAGAAATGTTGTATTAG 859 36 100.0 30 .................................... TGATGAAATTATAGAAGTACAATAGTTCAC 925 36 100.0 30 .................................... ACAAGAACAAATCTAAATGAAAATGCAGAT 991 36 100.0 30 .................................... AGAAGTTGTGGTGGTACATTAAAGGCTATA 1057 36 100.0 30 .................................... TGCAAAGTATGTTAAAAGATTTAACCAAAT 1123 36 100.0 30 .................................... TCAACTAAAGATATATCATTATCTCCTAAT 1189 36 97.2 30 .......C............................ ACAAGTCTAATGTATAAGCATATATGTTAG 1255 36 100.0 30 .................................... TTTCCAGTAACACCAGTTAAAGTTGCCATA 1321 36 100.0 29 .................................... GTACTTATTACTGAAACATTACAGATTTA 1386 36 100.0 30 .................................... TTAGATGAAGCTTGTAAAATACTAAAAATA 1452 36 100.0 30 .................................... TTTCCAGTAACACCAGTTAAAGTTGCCATA 1518 36 100.0 29 .................................... GTACTTATTACTGAAACATTACAGATTTA 1583 36 100.0 30 .................................... TTAGATGAAGCTTGTAAAATACTAAAAATA 1649 36 100.0 31 .................................... TAAAACCTTCGATTGCTTCACTTGTAGATTT 1716 36 100.0 30 .................................... AATAAAAAAACTAATTCTAATTATAGATCT 1782 36 100.0 30 .................................... AGGGAAACTTGGACAAAGTTATATCAAGTG 1848 36 100.0 30 .................................... ATACGGAAGTTATGGAATTATATTTAAACC 1914 36 100.0 30 .................................... AACAAACTCTATGTCGGCTACAGGTGTTGA 1980 36 100.0 30 .................................... TTGAGAAGTAATTTTATAGTAAGATTAGAA 2046 36 100.0 30 .................................... CGTAAAACATGGGATACCAATAGACAAAGA 2112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.9 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : TG # Right flank : TAGGAACTACCAAAGCCCTTGAATCTGCTAAGTTTCAAGGGCTTTGGTCTTTTTAAAAAACATTTAATTGACTGGAATTTATATTCTTTTCTTGTGGTTTTGGCGAACCTACTAAAAACTTCATTTCACAATATTGTTTTTCTGTAATTTGCAAATACCTAACAGATCCTTTAGGAGGTAGATTCTTCTTAAGCCTTGCAACATGCTTATTTGCACCATCTATTCCATTACAAATTCTAGAATATACAGAGTATTGAATCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTCTGGTACTCTTTTCTATCTTCTCTTTTTACAACAGGCAAATCAAAAAATACAATTAGTCTCATAAATCTCCTACTCATAATAATGGTATTCCAATGGTTTTATTAGTGGTAATTTTAATAATCTAAAATCTTTTTTACTACAAGCCGTTGTATAAGAAGCTACCATTTTATCTATGGCATTTAAAATAGAATGATTTTGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4301-4786 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000058.1 Clostridium tetani strain 202.15 contig_0058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4301 30 100.0 34 .............................. TGTCTTTTAGTATCTTCCATTTGTCCAATAGTAT 4365 30 100.0 35 .............................. GCATATACTTTACTTCTAAAACTAGCATCTTGATA 4430 30 100.0 33 .............................. TTTAATTCTAGTCTTCTTTTTTCATATCCAATA 4493 30 100.0 36 .............................. CTTAATCTAAGCACTGGCATGAGTGCTTCTTGCATT 4559 30 100.0 34 .............................. ATGGTTACCATCGTTCTTTATTCTTAAATTTAGT 4623 30 93.3 38 ...............AG............. TATCGTTGGAATGTAGAGGGTTTTATATCCTGGGATAC 4691 30 100.0 36 .............................. TTCTCTGTTCTGAATTTAATTTATAATACATAATTA 4757 29 90.0 0 ................-.A...T....... | T [4771] ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.9 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ACCTTAGGTAAGCCTATGTATGTAGTGGATATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGTCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCCTTGATTTAACAGGGATTGATTAATGTTTAAAGGGAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TAAATCATTTTGAGAATATACATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTCTCTTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCCCATATGCCATACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGAGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3198-2836 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAQ01000060.1 Clostridium tetani strain 202.15 contig_0060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3197 30 100.0 36 .............................. TAATATCTTTGAATTGTGACGCTAAAACACTACGAC 3131 30 100.0 36 .............................. GCCAGAGAATGGGGAATAAATTTAGGACAAGGATTA 3065 30 100.0 37 .............................. TCATTTACATGGCTATAAGTTTTGAGTGTCTGCTCAA 2998 30 100.0 36 .............................. TGCCTTCCTCTAAGTAACTAAACAATTCATTTATCT 2932 30 100.0 37 .............................. AAGATAATGAATACCAACCGGAAGAAGCAGCAAAAAC 2865 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.9 37 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATTTAAATTTAAAACCTTTTTTTATATCTATTTGCCAATCAT # Right flank : AACTAAGCGAAACTATTAAAAACAGGAAGTGGAAAAATGTGGTACTTGAATTTACTGCCAATTCTTAATTTCAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTGTTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //