Array 1 59203-60298 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSII01000014.1 Parabacteroides merdae strain AM34-17 AM34-17.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 59203 32 100.0 36 ................................ TGTCTCCATAATTGCACGAACAGCAAGAGCATTAGC 59271 32 100.0 35 ................................ TGATACCCCTATATCTCCTTATTATGGAGCTTTCA 59338 32 100.0 35 ................................ TGAGATTAACGATATTAACGAGCATGTTAATCTTC 59405 32 100.0 35 ................................ AACGACAGGAAGTATAGAAAATGTTTGGCAGGAAA 59472 32 100.0 33 ................................ TTAATGCTGGTGTTGGTGCTGCTTCCGGTCTTT 59537 32 100.0 33 ................................ ACGATACGTTAACCACTTAGGCAGAACACTATC 59602 32 100.0 34 ................................ ATAACCATATTCATTTTTAGGGAGATGTTCGGGA 59668 32 100.0 35 ................................ AATATCAGACTTTTGGAAAGTAGCAACAAAAGAAA 59735 32 100.0 34 ................................ ATACGTTTGCCCAGTTGCCGGCCGTCATGCAGGA 59801 32 100.0 33 ................................ CAGTTTGCGAACTAGTTGGTTTAAATCCATGAG 59866 32 100.0 34 ................................ AGACAGAAATATAAATGGGGGCATGGGTGGAGAA 59932 32 100.0 33 ................................ AGTTACAAGGTCAAAAACAACACGAACAGATTT 59997 32 100.0 35 ................................ CACAAAGTACGCAAAGGAACCTTGAAGAAAGACAA 60064 32 100.0 34 ................................ CCAGGGGAGGGAAGCCAATCGGAGGCCACCTGAG 60130 32 100.0 34 ................................ AATGTTGTAAAATCAGGAGCCATGACAGGTAGAT 60196 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 60267 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 17 32 100.0 35 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 65979-67922 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSII01000014.1 Parabacteroides merdae strain AM34-17 AM34-17.Scaf14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 65979 32 100.0 33 ................................ TTATACCGGTGATTCTCACGCAGAACCTTTTGT 66044 32 100.0 32 ................................ CCAACAGTTATATCGTCTTTGGCCTATGGATA 66108 32 100.0 33 ................................ TTTAATCAGCAGTGCATGGAATTTTGCTACAAT 66173 32 100.0 35 ................................ CTGGGATTTTGGCAGCAGCAGACAGGAAGCTCCAT 66240 32 100.0 34 ................................ AACCAAGGCAAGGAGGCGTTTGTCGCCTCGGTGA 66306 32 100.0 32 ................................ GCAAGATAATTAGCCGGTGGGCACCACCGAAA 66370 32 100.0 34 ................................ CCAGGCCATAAATGCAGTAGGAGCACCTACGCCG 66436 32 100.0 35 ................................ TTACGGCGTGACCAGGATATTTCGGCGCTTTTAAG 66503 32 100.0 35 ................................ ATATTTCTATATCTTTATATTTTAATTTAACTCAG 66570 32 100.0 36 ................................ GCAAGATAATTAGCCGGTGGGCACCACCGAAAGAAG 66638 32 100.0 35 ................................ CTCTTTCTATATCTTTATATTTTAATTTAACTCAG 66705 32 100.0 36 ................................ GCAAGATAATTAGCCGGTGGGCACCACCGAAAGAAG 66773 32 100.0 33 ................................ CTCTTGTCCATCTTGATATTATCATTTGCATCC 66838 32 100.0 34 ................................ ATTTTTGTCTGAATGGGAAACATCATAGGCATGA 66904 32 100.0 34 ................................ AAGGGCTTCGTCCTCGGTAATATAACACACATCC 66970 32 100.0 33 ................................ TGGATTAATAAGAATGACAGGATGTAAGCATTT 67035 32 100.0 34 ................................ TGGTTTGGATGTTCCCCCGGAACTAAAGGTTGAT 67101 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 67168 32 100.0 35 ................................ TTTAAGGTATATAGGCTGATAACCAATATGATCAA 67235 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 67301 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 67367 32 100.0 34 ................................ AGATGTTGAAAATCTAAAACGACACAATATAATT 67433 32 100.0 34 ................................ AAGGTCAAAACGCTTATTATTAAGTATAGCGGTA 67499 32 100.0 32 ................................ TTAGTCTCCGCCAAAGTCTTAGCATACGCAGC 67563 32 100.0 35 ................................ CTGGTAAATAAAACGTAACTCGCGAGTCTCGCCAA 67630 32 100.0 32 ................................ TGACGGTAATTTAAAGGACGGTCTTACCGTTT 67694 32 100.0 34 ................................ CGTTATATGTTTTATAACATATAGTCGGTTGTTG 67760 32 100.0 33 ................................ AACGTAGGATTTAGAGTTGATATTAACAAATGG 67825 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 67891 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.5 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : AGAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //