Array 1 160432-159306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNP01000003.1 Cronobacter dublinensis strain cro680B1-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160431 29 96.6 32 ............A................ GCCGCAACGATCAGCACGTGACGCTCGTTGGG 160370 29 100.0 32 ............................. GCCGCCGCTAAGTTGTGGAGGTTAGCACCCCG 160309 29 100.0 32 ............................. GCTATTCACAACCGCCTCCACGAGTGGCAGGT 160248 29 96.6 32 ............................C GGTGCACTGTTTGCCTCCGGGTAGCTAAATCA 160187 29 100.0 32 ............................. GTCACCGGCGCGCTAACCGGCACGGCCATCGG 160126 29 100.0 32 ............................. AGGTTTATACCTGCATTATGAAGCATAAACTC 160065 29 100.0 32 ............................. GGAACGCGCACCGGGCCTCTTACCACAATTAA 160004 29 100.0 32 ............................. TTCGCCAGGGATCAGGGTTTTGAACAGGAATG 159943 29 100.0 32 ............................. GCTTCAATCGCTGGCTTGAAAAACTGGCGCGT 159882 29 100.0 32 ............................. GCCGCTCCCGCGTCGTCGTCGGCTGGAGCCTC 159821 29 100.0 32 ............................. TGTTGCCGCTAAAATAGTGGAAATATCAGAAT 159760 29 100.0 32 ............................. CTTGCCTTGACAAAATCCGCGATTATGAAAGC 159699 29 100.0 32 ............................. GGGCGGAAATTATCAGCCGCGTGCAGGAGATG 159638 29 100.0 32 ............................. AATTTTGACCTTTTTCACTGGCATGAGCATAT 159577 29 100.0 32 ............................. GCTTTAATTTCTGGTATTTATTGCAACGGAAC 159516 29 100.0 32 ............................. AGGGACCAGTCGCGTTTGTGGTAGGTTTCCAG 159455 28 96.6 32 ....-........................ GGGTTAAAACGCGCGCGCTGATTGCCGCGCTC 159395 29 100.0 32 ............................. CGTCAGCGTGAGCTTGAGCAAAGGATGGAAGC 159334 29 93.1 0 ............T...............A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAGGTGCTGGCGGCGGGCGACATCGAACCGCCGCAACCCGCGGCGGATATGCTGCCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAGGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGTTGCTTGAACTGCGCGCCGGTGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCTGGCTTCGATTTCCAGACGTACGGCGTTAACCGACGTATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATGTGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : ATGAAAGAGTCTGGTAGTTGGAAAATCCGGTCTGTTGCGCGCCAACCGTCCGAGCCAGCACTGCGCCAGCCATAAGCTCCCGGCACCTGCACGGCCCTCACCGCGCGTAATAGCGCTTTCCGGTATCGCGCTAACCTCGCTTCATTAAGGCTACAGATGCATAGCTGATGACGTTTTGCGCATTTTTTCATTCAAATCGCGCTGTTTTACGCTCCGCTTGCCCTGATTGCGCAATAAACCAACATCCGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCAATTCTGGGTAAGTACTTGATAGTTATACGCTAAAGTACTGAAATCTCCCCCCCATAGCCTTAGTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188262-186474 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNP01000003.1 Cronobacter dublinensis strain cro680B1-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188261 29 100.0 32 ............................. GCGAGGCGGAATACACGCTCAACGCCTGGCTC 188200 29 100.0 33 ............................. CAAAAATTAAAATTTTGTTTCCTGATTATACGC 188138 29 100.0 32 ............................. CATCAGGCACAACCGGCGCGGGCGGTGCTGGC 188077 29 100.0 32 ............................. CGATTCAGACCAGGCGGAGCCGGGGACGACAC 188016 29 96.6 32 ............................A CGGTATTCGTAGGTCCCGGCGTCCACTACACC 187955 29 100.0 32 ............................. TTTTAAATGCCTTTCATCAGAAGAACAGGAAT 187894 29 100.0 32 ............................. TCTGGCGACAGCATCACTTTACACATCAACGG 187833 29 100.0 32 ............................. GTTGAAATTGCCGGCGTCAAAACTGAGATAGC 187772 29 100.0 32 ............................. ATTGATCGCGCAGGTGGGCATAAACCCACACA 187711 29 100.0 32 ............................. AACGTTATCTATCTGCTCAGGACTTCGATCTT 187650 29 100.0 32 ............................. TAGCAGCCGTCAAACTCGACGCGCGTCGCCGC 187589 29 100.0 32 ............................. GCGTGCAAAATCACCGGCCAGGCTCCCGACGA 187528 29 100.0 32 ............................. GCGGTTCGCCTCTCGGCTGTAATCGGCAGTTC 187467 29 100.0 32 ............................. ATGTTGAGTCCGAAATGGGTTCGGAACCCCGG 187406 29 100.0 32 ............................. TACGCGGCGGCTGATGCCCTCGGCCTCAGCCA 187345 29 100.0 32 ............................. TTTTCTGCGGCTTTTTTGGTAGCTGCATCGGC 187284 29 100.0 32 ............................. CCGTAAACGCCTTCATCAGAGAAAGAGACCGC 187223 29 100.0 32 ............................. CAAGGGCTACGCGATTGGCTTTAACTGGCACG 187162 29 100.0 32 ............................. CGCGTGTCCGGCTTCTGGCTCACCTGTAACAT 187101 29 100.0 33 ............................. CAGTCGTGAATTGATGTGAATCCACGCAGTCCT 187039 29 100.0 32 ............................. AATTTCCTGCGGGATGAGGGGATCGAGGCGGA 186978 29 96.6 32 ..................A.......... ATTTGTGCGCGTTGCTGGGGCGCTCATGGGGA 186917 29 100.0 32 ............................. TGATGCGGACGCGCGGGTCGAAAACCACGTCG 186856 29 100.0 32 ............................. CTACGAGTATAAATGCGACGAGGGATATCTTG 186795 29 96.6 32 .......................G..... AGCGGGTTGCGGATATTGTTGCGCAGCGTAAA 186734 29 100.0 20 ............................. TTAACTAGGCTTTGTACCCT Deletion [186686] 186685 29 96.6 32 ...........A................. CTGTACGGCGGCGACCAGCTCGCGGGCGACTA 186624 29 96.6 32 ...........A................. AGGTTCAACAGGTAACCGCCCGGCGTCGTGGC 186563 29 100.0 32 ............................. GCATTCCAAAAACCTTTCATTAACATATTCAT 186502 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGACAGGTGATTACGCTTGGGCCCGAAGACGAGGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATTCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGTTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : AACCCGTTTGCCATGGCGCCAAAAACTCATCTCTGTCACTCGTGCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGACAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCATTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //