Array 1 36374-37541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPA01000109.1 Pseudomonas aeruginosa strain 6014 6014_NODE_35.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36374 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36434 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36494 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36554 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 36614 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 36674 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 36734 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 36794 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36854 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36914 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36974 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37034 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37094 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37154 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37214 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37274 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37334 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37394 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37454 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37514 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48194-46066 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIPA01000109.1 Pseudomonas aeruginosa strain 6014 6014_NODE_35.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48193 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48133 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48073 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48013 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47953 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47893 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47833 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47773 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47713 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47653 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47593 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47533 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47473 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47413 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47353 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47293 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47233 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47173 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47113 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47053 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 46993 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 46933 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 46873 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46813 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46753 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46693 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46633 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46573 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46513 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46453 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46393 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46333 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46273 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46213 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46153 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46093 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //