Array 1 181430-184696 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPI01000006.1 Salmonella enterica subsp. enterica serovar Rough O:d:1,7 strain NY_FSL S10-1448 NODE_6_length_224806_cov_23.6533_ID_9458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 181430 29 100.0 32 ............................. CGCTGAATAATACCGCTCCGGCTGCTCCAGCT 181491 29 100.0 32 ............................. CAATGTTATTCCACTGGTTCGGACTCTTGAGG 181552 29 100.0 32 ............................. CTGGCGCTGATAATCATCAGCAGACAACGCTA 181613 29 100.0 32 ............................. GCAGCGGCTAGGTTGCATGGTCATTTGCGATC 181674 29 100.0 32 ............................. TGATTGCACTTATTGAGGCTGGTCATGAAGTC 181735 29 100.0 32 ............................. AACTAAAGAAAAAAGAAAAAATGTGACAATGA 181796 29 100.0 33 ............................. ATTGTTACCCTTTCTAATATGGAGGTTACTGAC 181858 29 100.0 32 ............................. CAGCCGTCAGGATAGCGCCAATAGTCACCAGA 181919 29 100.0 32 ............................. TATATTGACTAATCCAAAGCATAAACATAACC 181980 29 100.0 32 ............................. GATAAGGCTGAAATCATGGCTAAAAACGTTGA 182041 29 100.0 32 ............................. ATGCTTGACTGGTTTCGGCATGCCCGTAAACA 182102 29 100.0 32 ............................. GTATGACATGTTCTATTAGGGTTGGTTTGCTT 182163 29 100.0 32 ............................. AGTAGAATTTAAGAGACCAGCGACGTGAATTT 182224 29 100.0 32 ............................. GATCACATCAACATGACCGCCCCGCTAGACCG 182285 29 100.0 32 ............................. TGAATATGACTGCCTCAGACTTTTATATATTG 182346 29 100.0 32 ............................. TTCACCTTTAGGACAGCCACGCCCCAGCGCGT 182407 29 100.0 32 ............................. CGAAACCGTAAAACTCATATCAAGCGGAACAC 182468 29 100.0 32 ............................. TTCAAAGGCCAGCGTCGTATCCGTGATGGTCG 182529 29 100.0 32 ............................. GAGGGTTAGTTATGAAGTTGATTACGTTCCTG 182590 29 100.0 33 ............................. CCCGCCAACATTGCCCGCATCGCCAGTGACCGC 182652 29 100.0 32 ............................. CAGAAAAAGCTGGAACGCCTTGCCGAACGTCT 182713 29 100.0 32 ............................. CCGTAGTGTTAGCCGCCTTAACGTTATTAACA 182774 29 100.0 32 ............................. CACAATGTTTACTAAAATCATTATGAATAATC 182835 29 100.0 32 ............................. TGGGGTGCTGTGTGCAGGAGGGGATTTATTTG 182896 29 100.0 32 ............................. CGTGATTGGCGGTTATGAGGTTGTTGGGTACG 182957 29 100.0 32 ............................. GGTATTTTTGCGGCCTTCATTGCTTCCCGTTA 183018 29 100.0 32 ............................. ATTATAAAACGAAAGGCGATACTTCCGGTGGT 183079 29 100.0 32 ............................. CCATACTGACGTCTATTGCCAAATCGGATGCG 183140 29 100.0 33 ............................. CGCCTTTTCCGGTCGATCCGCATTTAACGGCGA 183202 29 100.0 32 ............................. GTCAGGAGGCTGCTTTAATCAACTGGTTTATA 183263 29 100.0 32 ............................. CGTATTAATGTTTTTTTATATATGGCACTGTT 183324 29 100.0 32 ............................. CCTATTGATAAATATTCGATAATGGCAAAGGA 183385 29 100.0 32 ............................. TTGTCCCGCGCCGAAACATGATCACGATATAC 183446 29 96.6 32 ............................A TGCCGGCACCGTTTGCTACATTAACTAACGCC 183507 29 100.0 32 ............................. TGATGCGACATAAATTACTCCTTAACCTTCTT 183568 29 100.0 32 ............................. TTATATCGAACGCACAAAGATTCAAAAACCAT 183629 29 100.0 32 ............................. ATTTTACGCTTCATTTAAAATTGTGATTGAAA 183690 29 100.0 32 ............................. GTTTTGGGGGCTTGGGGTGATTGACTGGCTGG 183751 29 100.0 32 ............................. CGCATTCATTAGTTCATATATTGTGCTTAGTT 183812 29 100.0 32 ............................. CGGTAGCAAAAATTTTTGCGGCGGAAGTTCAT 183873 29 100.0 32 ............................. TTGGTTTAGACGTTTCCAGCCAGACCCTTGAC 183934 29 100.0 32 ............................. TCTGTCTCCGGTTACAACGGCGTGCTGCCTGA 183995 29 100.0 34 ............................. CCGGGTTTTCACTACCATTCAATCAACCGGACGT 184058 29 100.0 32 ............................. CTAAAACCCGTCACGGTCGCGCTACTGGTAAA 184119 29 100.0 32 ............................. CAATAACGAAACAATAAATATTACCCAATCGG 184180 29 100.0 32 ............................. CTGACATGCCCCTTCACCGGCTGGTCGATGGT 184241 29 100.0 32 ............................. AGAGCCACTAATATTATTGAGCGGCTGTCTTG 184302 29 100.0 32 ............................. AAATGGTCTTCTCGTGAGCAGCACGGTTATAT 184363 29 100.0 32 ............................. TTCTCCGGCTCCCGTCGCGCTCTTGAACGTCT 184424 29 100.0 32 ............................. GCGGTGCGGTTGTTACTCCTGATGGTTTTGTG 184485 29 100.0 32 ............................. TCGATGCTTTTGAACCGTGTCGGGTGATGCCG 184546 29 100.0 32 ............................. CCTTTGCCGCCGCCCTGAAATATCTGGGTGTT 184607 29 100.0 32 ............................. TATCATGATGCTCCCGGTGCTGTGGAAGTAAA 184668 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================== ================== 54 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTCCACATAGGGTTTTTAATATCATCGGTTAAGATATTAATACCTGAGCGTTGATTAGCTAAAAGCTGTTCTCTTCCGTTAGCGATAGCAGCATTATTCATACCTCTCAATGTTCCATTACCGTAAAATTTCCCAGCGTCAGAAAGCGTATAATTGATCTCTCTGATATTGTCATAAGAATATGTCTTGTCTCTTTCTTTATCGAAAAAACGAACTGTGCGCTGTTTGGTATCTATGACGATCCCTGTTCGCTGACATTCATAAGATAAAATGTCTCCGTCCAGAACTTCCGTGAAGTTGTTGTAGTACTTTTTCTTCTGTATATCTACTGCGGTCATGATAACGACGAAGAGCACTACTAAAAATACGATACCTGCTGCTTCCACTCTTACTTCCTCCATGTAAATGAGTTAAAGGGGCTTGGCCTGTTCACAGAACTCTAAGGAGTTTCTGCCTCTTATGGCGCTGCGACTGAGGCTCTTGTCCCCGTCTCTCAAGAC # Right flank : GGTTCTTCCGCAATTTGGGTGGAAGAAAATCAATGAAACTTTTTAGTTAACAAAGATCTAAGCTGTTTTAAGTTATGGATAACTATATACCTTCACTTAAGACGCTGTTGCAGTTGCCTTGCGGGTGGCAAACGATCTGGCAAACCACTGCCTCTGGCGGAGTGACGATCCATTTACAGGCGATCCGTAAAACCGGGCACGGCCCTGAATGCATAAAGTGCAGCACTTCTGTACATAGTCGACGCCGCCGCCGGATACAGCATCTGCCATGTTCGGGCCAGGATCTCTGGCTGATATTTGCCGTTCGCCACTGGTACTGCCGAAATCCATCCTGTTTACGCAAAATCTTTGCCGAATCTTTAGAGCCTTTTGCTGGTTGGCGACAGCAGGCTTCGCAGTCACTGCAAAAATTACAGCATCAACCGGGAGGATTACCGGTGGAGAGCGGGACGACGGGCTGTAGCAGCAGTTCTGCGGACCAGCGCTGATACCCTTATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 111428-108715 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPI01000018.1 Salmonella enterica subsp. enterica serovar Rough O:d:1,7 strain NY_FSL S10-1448 NODE_18_length_119798_cov_24.3734_ID_9482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111427 29 100.0 32 ............................. CGTTGTTGCCTGAAATAGATGTGCGTGCTGAC 111366 29 100.0 32 ............................. GCTGGGAAATATGCATACCTGTCAGGTTCCGT 111305 29 100.0 32 ............................. ACCCGGTAATCAGGAAGCCCGTCATCAGTAAG 111244 29 100.0 32 ............................. GCGATACGATTTACGTCGGTGCGCGTAAATCC 111183 29 100.0 32 ............................. CCCGATTTCAACCGCGACGCTTTCGCCCTGAC 111122 29 100.0 32 ............................. GTTATACGCCGCCGCCACCTAAAGAGGTTCTG 111061 29 100.0 32 ............................. CCAGTATATCGGCCTGTCGAATATCTGGCGTC 111000 29 100.0 32 ............................. AGTTATACCGCTCTGAGTGGTCAAAAAATGAC 110939 29 100.0 32 ............................. CGAATTTTACCCCGGTGATATAATGATGCGTC 110878 29 100.0 33 ............................. GAAAATGAAAATGATTCAGTAGACACATATAAT 110816 29 100.0 32 ............................. GCGTTTAAAAGATAATGTTAAAGAGGAATTAA 110755 29 100.0 32 ............................. GGAGACTGACGGCCATCACTCCAGCTAATTAT 110694 29 100.0 32 ............................. GGTCATTAGGGTTACGCATACAGCGAGTAATA 110633 29 100.0 32 ............................. AAAATCAGGATAAATCACTCTGTCATCCTGGT 110572 29 100.0 32 ............................. GTTATCCGCGTGAATTACTGCGCCTGCTGATT 110511 29 100.0 32 ............................. TTGATGCCGGCGCGGATGTAACGCTCGCGCGG 110450 29 100.0 32 ............................. CCATTATCATAATTAAATAAGGGCAATTTTTC 110389 29 100.0 31 ............................. GACCAACGCTAGACCTATTTGTCTATATTGG 110329 29 100.0 32 ............................. CGCTCAGAAACGGCCTGAGTGTAATTCAGGGT 110268 29 100.0 32 ............................. GATGAATTAACCCCCGTTCTACATAGCGGGGG 110207 29 100.0 32 ............................. AAACTGAACCTAGACCAAATGCGCGTGCTGAT 110146 29 100.0 32 ............................. CCGCTTCCTTTACTTGATACATGTGATTAAAG 110085 29 100.0 32 ............................. GTTCTGGTCGTTACGTGAAAATTTCACGTAAT 110024 29 100.0 32 ............................. ACTTTTATTAATGATAAGGCAACCAGCCTTAT 109963 29 100.0 32 ............................. GCAATGGGCAAGTTTGCCAAGACTGACCGTAT 109902 29 100.0 32 ............................. CATGAAAACAGAGAACGCCGGAGAGGATATAT 109841 29 100.0 32 ............................. GCTTTTATGATTGACTCCGGCCCTGACCGTGA 109780 29 100.0 32 ............................. AAATAAAGAACGCGCGTGGTTCGAGTTTCTCA 109719 29 100.0 32 ............................. GAGCAGGAACAGGAGCAGGTTGTTACCTCCTC 109658 29 100.0 32 ............................. ACAATCGCGGTGAACTGGCGTTACGTCTCCAG 109597 29 100.0 32 ............................. TACAGGTATTGGCCAGCATAATTCGCCCGGGG 109536 29 100.0 32 ............................. GGGTCGCCTGTCATGGGTATTGCTAATCTGAA 109475 29 100.0 32 ............................. GTTTTGGGGGCTTGGGGTGATTGACTGGCTGG 109414 29 100.0 32 ............................. ACCGAGAGCCGAACGAGGCAACGGCGCGTAAG 109353 29 100.0 32 ............................. ACCGGGGTCAGAACATTTAACGAGGCACGGAA 109292 29 100.0 32 ............................. ATTTCGTCGACCTCAGCCGTCCGCTGGAGCCT 109231 29 100.0 32 ............................. GAAGATTAACCGGAAGCAGACTCACAAAACAC 109170 29 100.0 32 ............................. TACAGGCCCGCAGTCCGGCATCATATATCCGC 109109 29 100.0 32 ............................. AAAATGAAGAACTGAAGCGGCGCATTGCCGAG 109048 29 100.0 32 ............................. ATTTGCTCGCCTTCTCCCGGATAGCAGTAGAA 108987 29 100.0 32 ............................. CATATTCAATTAATTCTACAATCTCATTGTTG 108926 29 100.0 32 ............................. GGTGTTTCGCTGAACGTTTCCAGATCAGCATA 108865 29 100.0 32 ............................. GGCCGTTCATCCACGAGGTGTCAGGGGCGTTT 108804 29 96.6 32 ............T................ ATGTAAATATGCGTACGTGCATATAGCACCGG 108743 29 93.1 0 ........T...T................ | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : CTTTGTAAAAATCTTATGACGGTTTCAAATGGCATCCCTGTGCAAATGAGTCCCGTAAAAGTTACCGTGGAGCTGCTTGCTGATAACCTGCGACACAGCCTTCTGGGCCCGGCTTTTTTTACTGTTCCTCAGTTGCTGACGGAATATACCGGAAGCACGGTTTTTGCCGGGAAGTCACTGACGGTTGATGGTTGTCTCACAGCAGTCCGTCCGGGAAGTTCGCTGCAGTGTCTGGATAAATCAGCCTGAAGGGCCGGAGACAGAGTTATACAGCCTACATCCCAATAGTGTGACGACAGGACGTTTCCCCGGCAGTCATGCAGTCCCCTGCGGATTGTCCGTAGGGGGGAGTGATTATCGTTACCTGGAGAACATGGACGAATCTGACCTTTATATACTGTCGGAGGATGAACTGGATTATTTTAACTCATCGGCAGACCACCGTCTGGCTGAGCTGACGATGAACCGTCTGTATGACAAAGTGCCGGCCAGCGTGTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61497-62440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPI01000013.1 Salmonella enterica subsp. enterica serovar Rough O:d:1,7 strain NY_FSL S10-1448 NODE_13_length_136025_cov_24.9775_ID_9472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61497 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 61558 29 100.0 32 ............................. GCGTGTGTCCTTTGTCGAATCGCCCAAAATGG 61619 29 100.0 32 ............................. GCAGATTCGCCCAGGGATTCCGAAAATGCGTG 61680 29 100.0 32 ............................. AACCGCTCGCGGATACCACGTATACACCCTCC 61741 29 100.0 33 ............................. TTGCCATAGAAGAGTCTGACCCTGATAACTGGC 61803 29 100.0 32 ............................. ACCATAACAAAACAGATCCAGCGCCTCATTAG 61864 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAACCAATGAC 61925 29 100.0 32 ............................. GCGAATAACAAAAAGGATAAGCCCTACAATTG 61986 29 100.0 32 ............................. ATTTTGACCGTATCTGGCAGGTACTCACCCAG 62047 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 62108 29 100.0 32 ............................. GTTATCCGGGAAAAGTCGGGCAAAAAAAGCGT 62169 29 100.0 32 ............................. ATTGACCCGCAGCGGTGCCCCGTCGATTTGAA 62230 29 100.0 32 ............................. TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG 62291 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 62352 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 62413 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAAATTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78572-79272 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPI01000013.1 Salmonella enterica subsp. enterica serovar Rough O:d:1,7 strain NY_FSL S10-1448 NODE_13_length_136025_cov_24.9775_ID_9472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78572 29 100.0 32 ............................. ATTTCGCAGGTAAGCTCCAAGCTGCGCACGCT 78633 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 78694 29 100.0 32 ............................. AACCAGAACTTCACAACAGCGTATTTTTATAA 78755 29 100.0 32 ............................. ACTGAAACTACAGGCAGGGTAGCGCCGATTTC 78816 29 100.0 32 ............................. CGTCAGGGAGTTATTCAACGGCTACAGGAGCC 78877 29 100.0 32 ............................. CCAGATCACGTTTTTCTCGCAGAACTTCGTGG 78938 29 100.0 32 ............................. TGGCAATACTGCCGTTTCCATGTGGCAATACT 78999 29 100.0 32 ............................. ACTGACATTGTCAGCTAGAACCTTACACCGTG 79060 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 79121 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 79182 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 79243 29 96.6 0 ............T................ | A [79270] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACTAACACGGAATCGGGATTTGAGTTTCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //