Array 1 31739-30983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJT01000019.1 Staphylococcus simulans strain SNUC 1355 contig019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31738 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 31673 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 31607 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 31542 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 31476 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 31411 36 100.0 30 .................................... TTATTGTAATGATGAAATTGAATCAGTTGT 31345 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 31279 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 31213 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 31148 36 100.0 29 .................................... CGCAAAAAAACCATGCGTTGACGACCGCA 31083 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 31018 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.1 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : AGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 190231-191450 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJT01000004.1 Staphylococcus simulans strain SNUC 1355 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190231 36 100.0 30 .................................... AACTCGAACCATAGGAATCTGCAATACCTG 190297 36 100.0 30 .................................... CAGCAGCGGTCTTGTTTTATCTACAGACGG 190363 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 190429 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 190495 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 190560 36 100.0 30 .................................... CAGCTATCAAAGACGGACGTGTAACCAAAG 190626 36 100.0 30 .................................... GGTTGCTTGGCTGCGCCATTACCTCCAGGA 190692 36 100.0 30 .................................... CCTGCTTTCGTTAAGAAAAAGGCACAAGGG 190758 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 190824 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 190890 36 100.0 30 .................................... TTTCAGCAACAAAGAATATGCACTAAGTGT 190956 36 100.0 30 .................................... GGCGTTATCGGCACTATTGTCGCTTTCGTT 191022 36 100.0 29 .................................... AATATAACAACGTGGTTATAAGATCGGCA 191087 36 100.0 29 .................................... CCTGCGAAATATTGATAACCACGTCACAA 191152 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 191218 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 191284 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 191349 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 191415 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //