Array 1 181411-182221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPI010000001.1 Providencia vermicola strain DSM 17385 Scaffold01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 181411 28 100.0 32 ............................ TTATGGATTTGGTTAATTTTTATACAAATTAT 181471 28 100.0 32 ............................ CACTGTGTGCGAGGGCCGGTGCAATCTGACCA 181531 28 100.0 32 ............................ AATTGCTCACAAGCACCGTACACCGTATCAAC 181591 28 100.0 32 ............................ CCGTGTGAGAATTTGCGTGATAACAATCAAAT 181651 28 100.0 32 ............................ GATATTGTGAGAAAAGCCAAAGAAATTGGCAT 181711 28 100.0 32 ............................ TGAAAATATTTTGCATGGCGTACAATGGCAAA 181771 28 100.0 32 ............................ CGCATAAAGCGACTAGCGAGCTGTTGGTAGGC 181831 28 100.0 32 ............................ ATTCTCCCAATCAATAATGTCCTGCATTAACC 181891 28 100.0 32 ............................ TATATCCGATGCAGGGGAAATATTATCATCAA 181951 28 100.0 33 ............................ ATATTTAGACATTCTAGAGTTCTCAATTCTTTC 182012 28 100.0 32 ............................ TAAAGGATCAGAGGTTATTATTAGAGTTGTTA 182072 28 96.4 33 .............C.............. ATTCGCTTATCGGGTTATCTTTGTCGGCTGAAT 182133 28 92.9 32 ...........C........T....... ACGGCTACGCAAGCCGATTATGAGTGATGGTT 182193 28 78.6 0 ..........A.C..........TT.TC | C [182213] ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATTAAAGCGGCACTAGACCAAATTTCCAATATTGAAGCAAAACAAGGCTTACAACTGCAAGAAATTGATAAGCTGGATTTTTTAGCGGACACGCGTTCAATTCAAAATGCCGCCCGTAAAAGTGAGTTGCTTGAGACCAACTGGACAGGCACCACCACGGATTACTATAAAGAAAAAGCGATGTTTGAAGCATCACAAAGTATTTTCAAAGATTTAAACAGCATGTCTTTATTCGGTAGTCGTTAATCATCTAATACTTGAGTTCTACTCAACCGCGCTTTGCCGTTATTGGAGCGCGGTTTTTTGTTTTTGGTGATTTAGGGGTATTCCACCAAGAATATGTAAATTAAGTTGTGCTATCCTAAATTTACCCTTTTTTTTTTGCTCTTTAAAAAAATCTATTAAAACAATACGTTATAAAATAGGTGTAAAAAGAAGGTATTTTCCTGTTTTTAACGGTAACAGGTTGTTGTGATTCACTTTATTTATGATATTTTATA # Right flank : CTACGCACTATTACCGATAAAAGTTATTTTGACGATGGCTTTTGCCAAGCTCTTCACAAATTTCACTTTAGTGCCAACTTTGACTTGTTTAGTGTGGGAATGTAGATTCTAATTGACCTTAAAACATTCAATAAACTTATCAATTTAAAAGGATGTTACGTCATCATGGATGATTTTTCACCATCAGATCTCAAAACCATTTTGCACTCTAAGCGCGCCAATATGTACTACTTAGAACATTGCCGTGTGATGCAAAAAGATGGCAGAGTGCTGTATTTCACTGAAGCGAAAAATGAAAACCTGTACTTTAATATTCCTATTGCGAATACCACGGTTATTTTGCTCGGAACTGGAACGTCTATTACCCAAGCGGCGATGCGAATGCTGTCCCAAGCAGGTGTTTTAGTCGGGTTTTGTGGTGGTGGCGGGACACCGTTATATATGTCTACGGAAGTGGAGTGGATGACACCTGAAGGGGAATATCGACCAACAGAATATCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 190880-192266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSPI010000001.1 Providencia vermicola strain DSM 17385 Scaffold01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 190880 28 100.0 32 ............................ CTGCCATGGTGCTCAATAATCTGAGCGTGGTC 190940 28 100.0 32 ............................ AACTTCTGGCATCTCGCCCCTAAACACCTAAT 191000 28 100.0 32 ............................ AACTTTTACATTATCATCAGGATCATAAGGGT 191060 28 100.0 32 ............................ AAAAGTTGATAACGTATCATGAACGCCAAAAA 191120 28 100.0 32 ............................ ACAGCTTGATGAAAGGGCATTTGTGCTGCGTT 191180 28 100.0 32 ............................ TCATCACTGAAATGCCAATCTCTAAAGCAGAT 191240 28 100.0 32 ............................ GACACGCATTTGCTCCAGGAGCACGCTAAGTT 191300 28 100.0 32 ............................ GTCAACGAGCTGCTTATCAAGCATGAAAGACT 191360 28 100.0 32 ............................ GTCAATCATGCGATGAATGACGCGATATCTCG 191420 28 100.0 32 ............................ AGTTTGTTTGCCAGTTGGACAAACCCTTTTCC 191480 28 100.0 32 ............................ ATCTCTATCTCCTATCTATTAATCAACTCACC 191540 28 100.0 32 ............................ CATCAGCAATAGGCTGAGGCACAGGCAAATCA 191600 28 100.0 32 ............................ ACGGTCAGAGCAAAATTATTATTCGAGATATG 191660 28 92.9 32 ...........T.C.............. TTTGCAGCGCAGGAACTCGACGAAAGAAATTA 191720 28 100.0 32 ............................ GCACATGCCAGAGAAATCCCCTTACGAAATTA 191780 28 96.4 32 ...........T................ AGATTGAATAATCGCTATTGCTTTTAAACAAT 191840 28 92.9 32 ...........T........T....... ACGGCTACGCAAGCCGATTATGAGTGATGGTT 191900 28 100.0 32 ............................ TGTTTAATCAGGATGAAGTGGACGACTATAAA 191960 28 89.3 32 ...........T.C...T.......... ATAAGTAAGCCCTTCGATGTAACTGACAGACT 192020 28 75.0 191 ..........AT.C.......C...TGC TACGGCTTAGAAGGCCGTTGTTCACACTTCAATTTATCCATCATTGTTCGCTGAACAATAATTAAATCCATCTATTAATAATTGATATTTATTTAAGCGAATTTCTTCAATAGGTTAGTGATGCGTTTAATGCGAAATATATCTTGCTACTATCACTCGATAGCTTAGAAATGAAACAAGATACGGGTATT 192239 28 67.9 0 TA........ATG.......T..C.G.C | ========== ====== ====== ====== ============================ =============================================================================================================================================================================================== ================== 21 28 95.9 40 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATCAAGTCAATATTGCAGGTTCCCGAGCAATCTGTACCGGTGAGTTATATTCGGCGTCATGTAAAAGGAAAAAACCGAATAGAGGCGGATATGCAGAAAAAAGCGCAGCTATGGTCGGCGAAGACAGGGCAATCGTTGGATACCTGTTTAGAGGCGTTATCCAAAAGCAAGCCTAAGGCCAACAATCGCTTACCCTTTATTTGGGTTGAAAGTTTACACACCAAGCAAACTGAGGGTGGCGGGCGACCTTTTCCGTTGTTTATTGAAAGGCTGGAGTCAGCACAAGAGCAAAAAGGGCCATTTAATTGTTACGGTTTAAGCCAAGTGACGAATGGCTTAAATTTGGTTGCAACGGTTCCTCATTTTTGACCTTTATTTTTTGCTCTTTAAAAATAGATTTTAAAATCAATAAGCTATAAAACGGATAAAATAAAAGGGTATTTTTTAATAAATACCCTTAACGCATTGTTATCACATGTTTTTTGCTTTAAAGTTTATA # Right flank : CATAGTAGTAAACCTGAAAAAAGAGACGGGTTTTAACTGCTTTAATGAGGGGAATTATATGGAAATCATCATCAATTTTTCTTGGGTTACATTAATTATCAGATTCACAAAGTGGTACTGATAATAAACTAATGCTGATTGACTGAGTATCGATACTCAAACAAACAAATTAAACATCAGTGAAAGCTGCTCGAACGCTTGGTGGATAAGGCGTTCGGTATAGCGAGGGAGGATGGAAATAATCAGCCCTAGCATACTGATACCGATGGTCAGGGTGAGTGGGAAACCAACCACGAAAACAGACAGTTGTGGGGTCATGCGGTTGAGAATGCCCAGTGCAAGGTTGAGAATTAAAAACAGTGTAATAAAAGGTAGGGCTAGCATTAAGCCATTAATAAATATGGTGTTGGCGAATTGAGCGAATACCCAAAAACCATCGCGGTTTAGAGGGTTGGTTTGAATGGGGAGCAATTCGAATGAATTCACCACAATATAAATTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.74, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //