Array 1 223667-226379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDG01000001.1 Salmonella enterica subsp. enterica serovar Havana strain 97-0232 NODE_1_length_407454_cov_3.1271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223667 29 100.0 32 ............................. TCCTCGCCGAGCGCGTGCCGCAGGTGCTGTGG 223728 29 100.0 32 ............................. CGGTTAGCAAAATATCGGGCGGATACTGGATT 223789 29 96.6 32 ............................C CTCTCATTAAATATTTGGCGTAATCACGATCC 223850 29 100.0 32 ............................. GACTGGAATTAATTGGACCGTCTCTCACTGGT 223911 29 100.0 32 ............................. ATTTCCCAGTGGTTCACACCAGCCCCCGTCGT 223972 29 100.0 32 ............................. CAGATTTATTTCCCGCGCGGGCAGGCGCTGGA 224033 29 100.0 32 ............................. GCCCAATTAATTTTTTAGTGTCGGCCAGATAA 224094 29 100.0 32 ............................. TCTGGCCCGGTTCTCCTGTCGGTACGAAACGG 224155 29 100.0 32 ............................. AAATTGGAGACTGTGGGAGTGATCTCCATCGG 224216 29 100.0 32 ............................. GGACTCCATACCCCGTAACGTTGCCCGCTGGA 224277 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 224338 29 100.0 32 ............................. GATTTTGATATTCACTGCCCACCGGTGGGGAT 224399 29 100.0 32 ............................. CATTCAATACGGAGGGTATCGATGGATATCAA 224460 29 100.0 32 ............................. AACTTTCGTCAAACTGGATCGAAGGGCCACTT 224521 29 100.0 32 ............................. CGAACCTTGATTCAGTAATTGCTGGCTGGTTC 224582 29 100.0 32 ............................. ACGCTGGTCAGCTTGGTGAGTTTGTTACTACT 224643 29 100.0 32 ............................. ACAATCAGGATCATTACTATTGGCTCAATATT 224704 29 96.6 32 ............................A CCCCGCCGGTCACAAAAATATAGTTCGTTGTC 224765 29 96.6 32 ............................A AAACGAAGCGCAGGATGACTCAATACATATCC 224826 29 100.0 32 ............................. ATAACAGAGGGGATCACTGACTGGGTTATCGA 224887 29 100.0 32 ............................. TATAACGTCACATTGCGGCGTAAACATATCCG 224948 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 225009 29 100.0 32 ............................. TCCAGTACGTGACCCACGCGCGCGGCGCCGAC 225070 29 100.0 33 ............................. ATAATTACTCACGAATTAGCTGGAGAACGGTGC 225132 29 100.0 32 ............................. AGTTCGGTCACCTGAATGACGTGCGGGAATAC 225193 29 100.0 32 ............................. GTACATCATTATCACGGCTCCCCAATATGGGG 225254 29 100.0 32 ............................. TTATTTTCAAGGCGGAGCCTTCACCCACTTCC 225315 29 100.0 32 ............................. GTATCGCCAGGGTTGTTAAGGCTGTACGCGAA 225376 29 100.0 32 ............................. GCAGTGAGTAAACCGGATCGGTTTCCCCCTGC 225437 29 100.0 32 ............................. CTCAGGCGTTTCATCGTGCGGCATCCCGGAGA 225498 29 100.0 32 ............................. GATGCATGATGCTCGTGATGGGATTCACTGGC 225559 29 100.0 32 ............................. TTTTCAGTGCATATAAAACATTTGAATCAATA 225620 29 100.0 32 ............................. ATCCGTGACGGTTACCGTGTGGGCCGGTTCGT 225681 29 100.0 32 ............................. CGAATCCCAGGAAAGTCAGTACCGCCGAAAAG 225742 29 100.0 32 ............................. CCTGCTGTAAGGCGCTTATTGCCCGTGCTGCC 225803 29 100.0 32 ............................. CCGTCCAGATTATTGGCGTCGCTTGATAGCGG 225864 29 100.0 32 ............................. AAAATTTTCGCCTCTCGTTTTAATTATTGCTA 225925 29 100.0 31 ............................. CGGTTATATCGAACATTTTTCAGACTCGTAG 225985 29 100.0 32 ............................. AAACAGGACTCCCGGCAGATGAGTCGCCTGTT 226046 29 100.0 32 ............................. GTGCACTCACTATTTGCAGGAACCGTGACCGC 226107 29 100.0 32 ............................. TGTTGATGATGTATCGGCCATCGCGCCGGGTT 226168 29 100.0 32 ............................. GCTGACTGCGGAGCTGGAATCCAGAGGGTTAT 226229 29 100.0 33 ............................. TAGTCCAGCAGTTCGTCACCCTCTCCACCCTGC 226291 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 226352 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAATGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAGTGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 242976-244897 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDG01000001.1 Salmonella enterica subsp. enterica serovar Havana strain 97-0232 NODE_1_length_407454_cov_3.1271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242976 29 100.0 32 ............................. CTATTGCCGCCGGGGTGATCTCCCTCTATATC 243037 29 100.0 32 ............................. GCGGAGGCGTTCATCAGAGCCAACAAAACCTC 243098 29 100.0 32 ............................. GAGCGGCATCCAGAACACCCTTCTCAGTGAGT 243159 29 100.0 32 ............................. GCCGGTGCTGAGTTACAGTGTTTTGGTGAATT 243220 29 100.0 32 ............................. TCACCAGCTCGATAATCTTCAGTTGCTACAAA 243281 29 100.0 32 ............................. CAAATGGGGCAGGACATACTTGATATGTCCAC 243342 29 100.0 32 ............................. GTTGAATGCGCCGAGCGTGGCGCTGATAGTCG 243403 29 100.0 32 ............................. TAAAACGTGTTACCCGCTGTAAACGTGTTTGA 243464 29 100.0 32 ............................. ACGCCAAATCCCTCGCAATAGAAACGCTGTGC 243525 29 100.0 32 ............................. GTTATGTCGGCCAAACAGAAATAACCGAAGAG 243586 29 100.0 32 ............................. CCGTATCGATCGACAGCCTGATTGATCGCGAA 243647 29 100.0 32 ............................. GGCGTATACAGGGTGGATTTGTATTACGCCCT 243708 29 100.0 32 ............................. CCGTTGCCAGCGTCAATGGGGCGCAGCCTGAC 243769 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 243830 29 100.0 32 ............................. CCTGCACCAAATAAACTGGCGGGCGCTCTGGT 243891 29 100.0 32 ............................. AATTTGAAGTGCTGGCAAGGCGCGCCATTGCT 243952 29 100.0 32 ............................. GGGGACTTTATAACGCTTGAGAGGTCCAGCCA 244013 29 100.0 32 ............................. TCCGCAAACAGCGCAATATTGATTTACTCGCA 244074 29 100.0 32 ............................. TTTATCTTGATGGGCTTCGCGTGCCGCACGTA 244135 29 96.6 32 ............................A TCCTGAATAATCAGAATGTTGAAAATATAAAC 244196 29 100.0 32 ............................. GACACCTACACATTGAACAGCAAAAAACGGGT 244257 29 100.0 32 ............................. CGGCAAACGCCAGTTCAATAGCAGTATTTGCG 244318 29 100.0 32 ............................. ACATCTCCACTTACTAAACCGGCTCGGCCTGA 244379 29 100.0 32 ............................. CGATCGCCCCTTGTTCAATGATTGTGATCATT 244440 29 100.0 32 ............................. CACAATAAACGGCATCAGCTATGGGTTGATAG 244501 29 100.0 32 ............................. ACGCTGGTAGAGAGCTCGCCGGGGCGCGATGT 244562 29 100.0 32 ............................. GCCGCGCGAGAAACAGAGCGTAAAACAGCGGT 244623 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 244684 29 100.0 33 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATGC 244746 29 100.0 32 ............................. ATGAGTATCTGTACGGCGGGCGCATTCGTGGT 244807 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 244868 29 93.1 0 A...........T................ | A [244894] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //