Array 1 288974-289327 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUPC01000013.1 Listeria monocytogenes strain CFSAN028799 AFX60_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 288974 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 289040 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 289103 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 289167 29 96.6 37 A............................ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 289233 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [289256] 289299 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 92.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTTCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATTGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCATTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGAGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 305622-308760 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUPC01000013.1 Listeria monocytogenes strain CFSAN028799 AFX60_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 305622 29 100.0 34 ............................. CCATCCACGTGGACGGGACTTCTTTTACATCAAT 305685 29 100.0 36 ............................. TCAGCAAACCAATCCATTCAAGACGCCTTTGTGTTT 305750 29 100.0 35 ............................. TAGTATCTCACTTCAAAACTATCTGTGTCACTATT 305814 29 100.0 36 ............................. CAAGAAGCACGTAAGATGTTTGTAGCACCAGACAAC 305879 29 100.0 38 ............................. CAAAAAGAAGTCGTATCTGAAAATAGCAAAGCACCTCA 305946 29 100.0 37 ............................. GACACTCATTTTTGCTGCTTGCTTACTAGTGACCTTT 306012 29 100.0 36 ............................. ACTGATAACCCTAATTTTGTAGCAATTACTGAAAGT 306077 29 100.0 34 ............................. CCTGAAATGGGGGCTTTTTTGTGATGAAAAACAC 306140 29 100.0 35 ............................. TGGTATAAATCTAAAAATACACAAGTTGTAAATGT 306204 29 100.0 35 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAA 306268 29 100.0 36 ............................. CTAAAAAAGATTGGCAGAATGGAAATGTGTATGTGT 306333 29 100.0 34 ............................. CCATTACGTTTGCCTTGTTGTTAAAGCTTGCAAC 306396 29 100.0 35 ............................. AGCTGTAGCACCTTTCTGCAATCTTTCAGCCTCAT 306460 29 100.0 35 ............................. AAAGTAAATGCCGTAGAAACGTCCTCACAACCACA 306524 29 100.0 35 ............................. ACAAGTGGCTTAATATAAAACGTTGGTGCTGTGGG 306588 29 100.0 35 ............................. TGATAACCGTCAAATAAGTCAGTGTCAACTTCGTC 306652 29 100.0 35 ............................. GTTGTTTTTTATGTTTAGCATCCATAGTCGTAAGG 306716 29 100.0 36 ............................. TTCGAAAAGTCTGTTTTGCCCTATGTCTAATCCTTT 306781 29 100.0 36 ............................. GTGCTTAAAACGATGACAAAAGTAGGAATAACATCA 306846 29 100.0 36 ............................. TTGCTTATAGAAGCTTATTTGTCTATTATTACCAGC 306911 29 100.0 36 ............................. GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT 306976 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 307042 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 307106 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCTGTTTTCAATTATT 307171 29 100.0 35 ............................. TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT 307235 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 307299 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 307364 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 307429 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 307495 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 307560 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 307625 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 307689 29 100.0 35 ............................. TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC 307753 29 100.0 37 ............................. CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT 307819 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 307884 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 307950 29 100.0 36 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAAC 308015 28 96.6 34 .....-....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 308077 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 308142 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 308209 29 100.0 37 ............................. ATTACTTAATTCTAGTTACGTTGCTGCGTTTACTTCT 308275 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAATAA 308339 29 100.0 37 ............................. CAGTGATTATGCTAAGACCTACACAATCGTTATCACT 308405 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 308470 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 308535 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 308601 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 308665 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 308731 29 93.1 0 .......................A....C | C [308754] ========== ====== ====== ====== ============================= ====================================== ================== 49 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGTGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGCTTCTGCCATTCCAGCTCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGCAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //