Array 1 8887-7298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOK010000011.1 Vibrio cholerae strain C1S.2 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8886 28 100.0 32 ............................ GCACTCATCAAGCACAATTAGACCGTCCTTAG 8826 28 100.0 32 ............................ AGCCGTCCGCCGCAGTCATCAGCTTTGCTGAT 8766 28 100.0 32 ............................ ATTGCTCTACAGAGTGGCCCATGTGATCACTC 8706 28 100.0 32 ............................ AGTTCCCAGCCGCCGACGCCCAAGGGGCGCTA 8646 28 100.0 32 ............................ TGTATCGGTAGATCGTAATCGTCCGAAAATCT 8586 28 100.0 32 ............................ TTTATACGTCCACTCGGCTGGACAAGGCACTC 8526 28 100.0 32 ............................ ACCTGCGCACTGATGCTGTGCTGAGTCTCTGG 8466 28 100.0 32 ............................ CGACACAAAGAAAGGTCATTACTGATGCGATC 8406 28 100.0 32 ............................ TTATCCGATGCCTGCTTTTGCTCTTGATTTAT 8346 28 100.0 32 ............................ TAATACGCACTGAGAAACTAGCTCATTAAACT 8286 28 100.0 32 ............................ AGTTAAAAGCAGGCGAACTAGAGCTGTCAATG 8226 28 100.0 32 ............................ CAATAGAACTCTATATCAGGCTTTCACAGAAC 8166 28 100.0 32 ............................ TGATTAAGCGACAAACCGTGAGACCATTCGAA 8106 28 100.0 32 ............................ GTACTATCAACAAACAGGGCGCTGCGAGCGTC 8046 28 100.0 32 ............................ TTACAAGTCTCCAAGTAACCAAAGCCTGCAAA 7986 28 100.0 32 ............................ TTGAACAGTTACCTGACCAGCAAACAAAGCTT 7926 28 100.0 33 ............................ CTCTTGAATGTCGCTTAGGAAATCAATCAGCTC 7865 28 100.0 32 ............................ TAAGCCCAGCCAACGCCACCAAAACACTCGCT 7805 28 100.0 32 ............................ TAAATCAAAACCTGCACCGTTACCCCAAGGTT 7745 28 100.0 32 ............................ GTTCTCGGTGATCTCGGGGATACCTTGCATTC 7685 28 100.0 32 ............................ TATTGTGCGTCATCGCGTTATCATCGTTATCC 7625 28 100.0 32 ............................ AGTGCGGCCAACTGCGATTGACTCGGATCATT 7565 28 100.0 32 ............................ TTAAAGTCTCTTACCGATCTACGCACCAAGGT 7505 28 100.0 32 ............................ TTGCGGGGAAGGCTTTCGGCCTTCTTGGGTTA 7445 28 100.0 32 ............................ TAAAAGCAGAAGAAATGGGGCGCTTGGGTGAC 7385 28 100.0 32 ............................ TGATCCTACAGTTCACAAGACAGAAGTCGCTG 7325 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2553-241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOK010000029.1 Vibrio cholerae strain C1S.2 Scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2552 28 100.0 32 ............................ ACCACGGGCATGATGTTCATTTAGTCACTCAA 2492 28 100.0 32 ............................ ATAAAGAGGAAGACCAGAAAAATCAACACCGG 2432 28 100.0 32 ............................ ATTGGAGGTTATCGAGCAACGATTTGATATTA 2372 28 100.0 32 ............................ TCACGAACGAGTGAGCCAATTACGGTATTAAC 2312 28 100.0 32 ............................ CAAACGGAACCCTCTACAACCAATCTAATGTC 2252 28 100.0 32 ............................ TGTTGCGTGTAAAGTGCGGCAGCGCAAAGGCT 2192 28 100.0 32 ............................ GTATCAAAGAGCACGGTGAGCAGACTAAACAT 2132 28 100.0 32 ............................ ATTAACGATTCGGCTTGATGCAACAAAAGGCG 2072 28 100.0 32 ............................ AACCCAATCGGTAAATGTCTCGCGAACGTAAT 2012 28 100.0 32 ............................ GATTGCAGATCGGTTTGATAGGCCTTGGTGAT 1952 28 100.0 32 ............................ TGGAGCTACTGGTGCAATCAAAGCGTGCGCAC 1892 28 100.0 32 ............................ AGCGAGCTGCACCGCATACCACTCACAAAAAC 1832 28 100.0 32 ............................ GCGTACCATGTGTATCCTGTTGCGCCATTTCC 1772 28 100.0 32 ............................ AGACGAAGATATTGTCGAGAACGCACCAACAC 1712 28 100.0 33 ............................ AATCATCGTAAGTCCAGATATCAAGGCCTGAAT 1651 28 100.0 33 ............................ CAGTTCTGGCGCAGTGTGTTCACGTCCCATTTA 1590 28 100.0 32 ............................ AGTGAATGAGTTATGGGCTCAAGTTGAAGAAT 1530 28 100.0 32 ............................ ATTGCGCAATGGCTTATTGAAATCGAGTACAG 1470 28 100.0 32 ............................ GTGCTGAAAGATGGCTCAGAAGTTTGGCTGGC 1410 28 100.0 32 ............................ GTGAAGAGGCGATGGCCGCTGAAGCTTTGTTT 1350 28 100.0 33 ............................ TGGGGGCAGGTAAAGTGGAGAAAAGATCCGGAA 1289 28 100.0 32 ............................ TTCTGGAACTTCGCAGTTGTAGTATTCACGGC 1229 28 100.0 32 ............................ AATTTCCAGCGCTGCATCAAGTGACATTACTT 1169 28 100.0 32 ............................ AAGCTTGAGACTGGTAAATATCAAGACCATTC 1109 28 100.0 32 ............................ TTTTGCGATTTTCCTTGATTGGTCATTTGGCC 1049 28 100.0 32 ............................ TTGATAGCCATGCTTTTGCAAAAATCGTTTTC 989 28 100.0 32 ............................ TTTAATGGTTTTCTTTGCCGTTCTTAGCCCTA 929 28 100.0 32 ............................ TTTTGTTTTTGTTTCCAATACGTCAGGCGAAG 869 28 100.0 33 ............................ AAGACATTGCAAACAAGCACGTGGGCGATCTAT 808 28 100.0 32 ............................ ACCGTCATCTTCACTGAACATGATGGTGTTGA 748 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCCGTGT 688 28 100.0 32 ............................ ACTTACAAGTCAGCTCGCACGACGCCTCAGCC 628 28 100.0 32 ............................ ACTTCGACGATTAGGTTAGGCTCGCCGTGGAT 568 28 100.0 32 ............................ GTCATGTGCATTTTTATAATGCGACTGGTGGT 508 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 448 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 388 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 328 28 100.0 32 ............................ ATCCGGCACAGTCGAAGAAATCGGCTGATTAA 268 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAAGCTTATCCATCATGATCTCGTAGGTGCTTGCAGGGACGCAGTAGAAAGCCGGCTCATTTCGGTTGAGTACAGCAACAGGAGCACCGAAGGCGCTAGTTGCAACTTTCATTGGGTTTGCTTTAAATTCGGTAATGCTTGCTGCAACATCAGCTAGGATTCTAGTGGTCATTTAATCAGTCCTTTATGTGGTCTTTAATTGGGTCATTATAGTCTTGAAAATGCAGTTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGTAGTGGTTACGGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCAGAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 802-1190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOK010000054.1 Vibrio cholerae strain C1S.2 Scaffold54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 802 28 100.0 33 ............................ CAATAGAGCCAAGTGTCAAAGTGGTTGTGTATT 863 28 100.0 32 ............................ TCTTGAGGCTCACTTGCTTTATAGTTCCACTT 923 28 100.0 32 ............................ GAGCTTGAAAAGTCAGAGCTTGCGCGAACAAT 983 28 100.0 32 ............................ AAAAAGCTCGTTTAAGGTCGGCACGGTTAAAA 1043 28 100.0 32 ............................ TGCTCCGTTTAAACAATTGTTTCCATTAGAAA 1103 28 100.0 32 ............................ TCGATCGCATGAGCAATAAGCATGTGATAAGC 1163 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTTCCACACAGCAAGTTTGGTTTCACAAAAGGCTGCATCATCGCTGTGATCTTGCTTTCTTTGTCGCGGACTCTTAATCGTGGCCAACTTAGCCTAGATCGTTTTAAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGGGTTTGTGAGATGCTTCTGCGTAAAATGGCTTTCAAATAAAGGTGTTTAAAAATCATTATTAAACAATAAGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTTGTGGTTATGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTAATCCATAAAAATCAGTAGGTTGTGTTATCGATTTCTTTGGCATTTCGTTCAGGTTTTGTCGGCAATTCAATATTGTTTGTCGCTGCCTAATGAAGCGGCAATGTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //