Array 1 1413223-1414532 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023326.1 Acetobacter aceti strain JCM20276 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1413223 29 100.0 32 ............................. GATTGGGACAGCACGAACTCAAACGGCTGGCG 1413284 29 100.0 32 ............................. GCCGTAATGAATTACAGCGCCCATCCACTTCC 1413345 29 100.0 32 ............................. GCCGCGAGCCAGCCCGCGATGCGGGCAGTCTC 1413406 29 100.0 32 ............................. ATTATCGCCGCCCATGATGCCGCCGTTAAGGA 1413467 29 100.0 32 ............................. TGATTTTGGCCTATTTTATCGCCCAGGCCATA 1413528 29 100.0 32 ............................. GATTGGGACAGCACGAACTCAAACGGCTGGCG 1413589 29 100.0 32 ............................. ATGTTGAGCGGATCGGCCCTTATATTGATGGG 1413650 29 100.0 32 ............................. CGCAATGAATTGCGGCTGGTGAGGTAATATGA 1413711 29 100.0 32 ............................. AACGATGGACCTCCACACTATCCTGTTGATAG 1413772 29 100.0 32 ............................. CGATGGCGGAGCTACCGCCGCCTGTGTATCGC 1413833 29 100.0 32 ............................. ATAGGCGACGATGGTACATTCTTTATAAACCA 1413894 29 100.0 32 ............................. ATCGAGGCGCCCTCTGAGGAAGGAGATCAGAA 1413955 29 100.0 32 ............................. TTGGTTCGCATCCGCCGTTGTCGTGTCTGTTG 1414016 29 100.0 32 ............................. GTGTGTCCATCAACACAGCCTATTCGAACCAG 1414077 29 100.0 32 ............................. CGGCTGGAGTGGTTGGAAAACGTTTCGGTGAA 1414138 29 100.0 32 ............................. AGATCGACGCATATGAGAGGCGGTGGCCATCC 1414199 29 100.0 32 ............................. TCGCTGTTCGGCGTGATGCCGGTCGTGGTCGT 1414260 29 100.0 32 ............................. CAGCAGGACGGGCCGCCTCTCACCGCCCATAA 1414321 29 100.0 32 ............................. AATGCGGCGGGTAATCTGAAGGCCAGCGGCAA 1414382 29 100.0 32 ............................. ATACGAATCTAGCGACAGCTATTTCTTCCGGG 1414443 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGCGACGAGCGC 1414504 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.7 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : ACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAAATGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CCATTTACGTTAAGGGCGGAAATGTCGCTCTACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTAACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCGGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGTCCGAGATCGATGTCAGCGCACCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGAGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2148096-2147400 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023326.1 Acetobacter aceti strain JCM20276 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2148095 36 100.0 30 .................................... TTCAGAAGGTCGCGTGCCGACCTGCCCAGC 2148029 36 100.0 30 .................................... CGGCCGAGCTGGTCGAACGCGGCCAGCCCG 2147963 36 100.0 30 .................................... GAGGGAGCGGTCTCATGGCTGAACCGATCC 2147897 36 100.0 30 .................................... TGGAGCGGTTCGGCGTGGCGGCCGACATAG 2147831 36 100.0 30 .................................... CCGCCGTTGCACCTGTAGTCATCACCAGGC 2147765 36 100.0 30 .................................... AAAAGACAGGTTGGCGGAGCGATCAATAGA 2147699 36 100.0 30 .................................... AGTATGCCTCTGCTCCCCTCCGGACGAGAA 2147633 36 100.0 30 .................................... GGAAGGGGGGAGACAGGGACTGCGAACCCT 2147567 36 100.0 30 .................................... TCCCATCAGATGTATCAGCAAAGAACTCAC 2147501 36 100.0 30 .................................... AACCTTGTGCGACAGCCAGGTGGCCTGTTG 2147435 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : AGTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATTGCTGCATTCTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : GCCTTCTTGGTAACCAGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGTAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACCGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGTGTTTGATGTTATTCCGATATCGATATTATGTTCGTGGTTTCAGAGAGGGCAGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2444978-2444035 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023326.1 Acetobacter aceti strain JCM20276 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2444977 29 100.0 32 ............................. GCATCCACCAAATCGGCCATGTGGTATGTTGC 2444916 29 100.0 32 ............................. AGGGTTGATGCTGGACAGGACATAGCGACCAT 2444855 29 100.0 32 ............................. AACAGCGGTCCATGTTTGAGTGCCGGTATCCA 2444794 29 100.0 32 ............................. GCTGAAACCTTCATTTCACTCTCCCACCTTTC 2444733 29 96.6 32 ............................C GCGTCTGCCCATGTGGAAATGAGAGGACGCAG 2444672 29 100.0 32 ............................. TTCTGGGTCGTGGCTATCATTTCCACGGCGGC 2444611 29 100.0 32 ............................. AGCAATGGCTTTTGACGTGGTGTATTGGCGGT 2444550 29 100.0 32 ............................. TCAGGATTTCGATATGGGGGGGGCGGAAGGAA 2444489 29 100.0 32 ............................. GATGAAGCTATGAAAAAGAACGCTGACAAGGC 2444428 29 100.0 32 ............................. ACCAGACCGGCGTATAATTGGTGGTTGTCTGC 2444367 29 100.0 32 ............................. CCCACAGCACCGGGAACGACCGGCTCACAGGA 2444306 29 100.0 32 ............................. CGATCCGACGCTCGAAAATGAAAAACAGAAGC 2444245 29 100.0 32 ............................. TTTTTCTCGTCGTCACCGTTAGGCGTTGACAA 2444184 29 100.0 32 ............................. TGATGCGCCACCTGTGACGCTCCCTGACACCT 2444123 29 100.0 32 ............................. GCGCGCTGCAGACAACCGAGCATGCCGAGGCC 2444062 28 89.7 0 ..............T........-..T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : GTCGGACGGGACTGCTTGGCCGCATCATCCCCGCTATTGAGGAAGTGCTCTCCGCCGGAGACATTCCTCGTCCTGAGCCACCGCCCGAGGCTGTCCCTCCTGCTTTTGACGAGGCGCAGTCCGGCGACGCGGGCCACCGGGGATGATGGTCGTCGTCGTCACGAACGCGCCACCACGCCTGCGCGGCAGACTCGCCGCATGGCTGGTCGAAGTGCGGGCCGGTGTCTATGTCGGCGATTATTCGGCCCGTACGCGTGAAATGATCTGGCGACAGGTGACAGAGGGTCTGGAAGCCGGCGATGCGGTCATGGTGTGGAAAGCGCCCACGGATCAGGGCTATGACTTTCTCACCTTCGGTCGCAACCGCCGGATGCCCGTTGATTTTGACGGTCTGAAGCTTGTAAGTTTCCACCCGGAAAAACCCGCCTGAAAACCTGTTTTCAGTTGGTAGGATCTTTGATAACGTAAAAACCGTTTTAGATCAGTAGCTTCCACGAAGA # Right flank : AGATTTGCTTAGCTGGTGCTTCTTCCAGCAAGAGGAAGTCGTTTTCAGATAAACCCGTAATGAAGATACGCGCTATAAGCAGTCAGTTACGGACCGCTGAACGGTATATCTTTCAGGGATTCATGTCATGGCGACAGGCTGGGCTCCGGAAGGAGCAGTGCAGGAACAGATCGACAACACCATCGCCGATGCAGTCAAACAGGCCCGCTCCGGCATTCCGTCCGGAGAGAGCGCTCTTGAATGTTGTGAGTGCGGAGAACCGATCCCCGAAGCCAGACGCAAGGCGCTGGCGGGAGTGAAGTTCTGCATCGACTGCCAGTCAGAACGGGACAGCCAGCGTGTATTCAGCAGCATCAACCGTCGTGGCAGCAAGGACAGTCAGTTGCGGTAGCGGAAGCCGTCTGTCCGGAAGAAAGCATCCTTCATCCAATAGCTGCCGATGCGCGCACCCAACACCCCGGCAGTTCGATATTCTGTCTTGTGGTCCGATTAACGGGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //