Array 1 166208-164104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZD010000006.1 Salmonella enterica strain 20REF-1017 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166207 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 166146 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 166085 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 166024 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 165963 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 165902 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 165841 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 165780 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 165719 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 165658 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 165597 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 165536 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 165475 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 165414 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 165353 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 165292 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 165231 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 165170 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 165109 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 165048 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 164987 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 164926 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 164865 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 164804 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 164743 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 164682 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 164621 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 164560 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 164499 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 164438 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 164377 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 164316 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 164255 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 164194 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 164133 29 100.0 0 ............................. | A [164106] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184737-182879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJZD010000006.1 Salmonella enterica strain 20REF-1017 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 184736 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 184675 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 184614 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 184553 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 184492 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 184431 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 184370 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 184309 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 184248 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 184187 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 184126 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 184065 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 184004 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 183943 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 183882 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 183821 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 183760 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 183699 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 183638 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 183577 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 183516 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 183455 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 183394 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 183333 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 183272 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 183211 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 183150 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 183089 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 183028 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182967 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 182906 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //