Array 1 66003-65573 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAE01000032.1 Bacteroides faecis strain BIOML-A6 scaffold32_size66467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 66002 47 100.0 30 ............................................... GGCAACGAGAAGAGGTAACTATAGCGCTAA 65925 47 100.0 29 ............................................... AGCGACATCAAACTACCTATGATGTATGT 65849 47 100.0 30 ............................................... CGACGGAAGTCAAGACAACGAGATAATCAC 65772 47 100.0 30 ............................................... GGAGGATTATTCAAAGGCGATGATGGATTA 65695 47 100.0 29 ............................................... TTAGGAAAAAACACACTGGGCGACAATAA 65619 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : GAATTAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCGAATTGCTGAAATAATCCTTGCGATAGTATGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCCAGGAGCAAGTGCAACAACAGGTGTGTACGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCAACGCACGGAGAAACAAGGTGGCAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAATACAGCGTATCAGGAATACATGCGTTTGGTTCGTG # Right flank : AGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAAGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 66462-66262 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAE01000032.1 Bacteroides faecis strain BIOML-A6 scaffold32_size66467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 66461 47 100.0 30 ............................................... GAATTGCTGAAATAATCCTTGCGATAGTAT 66384 47 100.0 29 ............................................... CAGGAGCAAGTGCAACAACAGGTGTGTAC 66308 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : GAATT # Right flank : AACGCACGGAGAAACAAGGTGGCAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAATACAGCGTATCAGGAATACATGCGTTTGGTTCGTGAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCGGCAACGAGAAGAGGTAACTATAGCGCTAAGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCAGCGACATCAAACTACCTATGATGTATGTGTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGCCGACGGAAGTCAAGACAACGAGATAATCACGTTGTGATTTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [21.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 58045-57154 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAE01000059.1 Bacteroides faecis strain BIOML-A6 scaffold59_size58165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 58044 47 100.0 30 ............................................... ATAGCGTTATTGCAAAAAGAAGGAGCCGTA 57967 47 100.0 29 ............................................... TACGAGATGATAACAAGAAGAATGTCAGT 57891 47 100.0 30 ............................................... TCTTCTGTCATGGGTACTTTAAATGTACAT 57814 47 100.0 29 ............................................... AGCGACATCAAATTACCTATGATGTACGT 57738 47 100.0 30 ............................................... CTCTACTCAAGAGACTGGAAAAAGTAATTA 57661 47 100.0 30 ............................................... CAAACCTTACTTAAACATTTCTTTTCCATA 57584 47 100.0 30 ............................................... GCAGGCTCATAAACAACAACAAGGAGGCTA 57507 47 100.0 30 ............................................... TGTGATATCTGTAAGATTTGCCGTCAAACA 57430 47 100.0 30 ............................................... ATCACGTTCCCAATTAGCATAATGAAGCTC 57353 47 100.0 30 ............................................... CAAAAACAAACATATCAAGCAGCGCGTTGT 57276 47 100.0 29 ............................................... TATAAATATCTAGGCTTTAGCGAATCAAG 57200 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : AAATTAGTATCTTTGAACCATTGGAAACAACCAGAGATGTAATCTTACACAAGAAAGGCA # Right flank : ATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCTACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 819-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAE01000093.1 Bacteroides faecis strain BIOML-A6 scaffold94_size11899, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 818 47 100.0 29 ............................................... TTCTTCAATTGTACCGTCTAAGTCTATCA 742 47 100.0 30 ............................................... TATTCAAGAAAAACTTGAATTAGCTTATCA 665 47 100.0 30 ............................................... TCCGTACAGGTTTGGGAGAGGCTGAATATC 588 47 100.0 29 ............................................... GAGTAATAGCATTCATGTCAATATCACGA 512 47 100.0 30 ............................................... AAGCCGAGGTCTGAACAGGACGAGTACGGG 435 47 100.0 29 ............................................... CATATTTTAGGAATACATTTGTGATAGCT 359 47 100.0 30 ............................................... TGTTATCTTTTTGATTACGCTACAAATTTA 282 47 100.0 30 ............................................... GCATTGATGCATAGATAAATATAGGTATTA 205 47 100.0 29 ............................................... GGTATCAAGATTACGAACCACCTTAATGT 129 47 100.0 30 ............................................... CAGATGCGACAAAAGCAACAATAACACTCA 52 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : TAAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCGCCATCTCTTTTTTTACGCAACTTGCTTT # Right flank : CAACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //