Array 1 17442-16938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACH010000006.1 Streptococcus dysgalactiae strain iSDSE118 NODE_6_length_80988_cov_61.0742, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 17441 32 100.0 34 ................................ TCTGGCTCTCTCATAGTCTCCATCACAGTCAAGA 17375 32 100.0 36 ................................ ATCTTGTGGCTTGCTAAAGTCAAGGAGCAATTCCTC 17307 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 17237 32 100.0 34 ................................ AAATTGCAACCTAGCAAATTCTACTTTCTCGACC 17171 32 100.0 36 ................................ TTTATAAACCTGCCTTTCTGTTAATTCTTTATCTCT 17103 32 100.0 36 ................................ ATTGTAATCCACTGCCTGCTCTCAACTGATTACTTG 17035 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 16969 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 98.8 36 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCAGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34562-35390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACH010000009.1 Streptococcus dysgalactiae strain iSDSE118 NODE_9_length_72649_cov_56.8069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34562 36 100.0 30 .................................... TATTAACGGTAAAACCAAAAAAGGTATGTT 34628 36 100.0 30 .................................... AGACTTATGCCTTTTAGTGTTTTTACCAAT 34694 36 100.0 30 .................................... TAAATTTATCGAAAACGTTTTGGCAGAATA 34760 36 100.0 30 .................................... TGTAGTGACCTTTGACTTCCTATTTAGCAC 34826 36 100.0 30 .................................... TCGCTTTCTGTTGAAAATCCTCTACTGAAA 34892 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 34958 36 100.0 31 .................................... CGTGGCGCTTAAATGCTCCTATGACACGCTC 35025 36 100.0 30 .................................... ACACTTTTTTGCCACACAAGGACAGATAGC 35091 36 100.0 30 .................................... TGAGCATCAAGTCAGACAGAGTGCTCTGTT 35157 36 100.0 30 .................................... AATCAAGATTTTGCGACTTACGGCGTAAAT 35223 36 100.0 30 .................................... CCTTTAATTTAAAATGGCTTTGCCAGCAAA 35289 36 100.0 30 .................................... GACAAAGCGAATTGCTGAGTTGACGGGAAA 35355 36 88.9 0 ....AC...........................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.1 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTGTTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //