Array 1 71960-72523 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820568.1 Lactobacillus sp. HMSC073D04 Scaffold48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71960 36 100.0 30 .................................... GTCTCAATTGATTTGGATATAAATTTGTTT 72026 36 100.0 30 .................................... AACTGTTGATACTCTTGAATATAAAGGGGT 72092 36 100.0 30 .................................... TGTCTCCCACGGAAAAGTGGCACCTAAAAA 72158 36 100.0 30 .................................... TTTGGCTACAAGCATGACCCAACGGCAGGG 72224 36 97.2 30 ........C........................... GTGTCCAACTTAATATCTGACCACTTAATA 72290 36 100.0 30 .................................... TCTTCTGCCATATCCTGACCCCCTTAAAGA 72356 36 100.0 30 .................................... GAAAAATGTCAATGTGTCGATGACCTGGCT 72422 36 100.0 30 .................................... TCTTCTGCCATATCCTGACCCCCTTAAAGA 72488 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : ACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTAAACAAGCTGTTAGATCAGGTTAAGGACACATCGTTAGAATTACTTCTCATTGAATTTTCAGATGTCGAACGTGGAAAGTTTTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTCATGGATAACCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACACAATTACCCCAGATTGACCCAAAACGTCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGATGTCAGATCAATCAGTTCAAGAACGTTTATGCAAGAGAGAAGGGACAAGTTTTT # Right flank : CGATAAAAGTGATTAGTGTCGATTGGCGTGCGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGCCAGCGACTGGGTGCAACAATTACTGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGACTTGGCGGATCTCGTTGTGCTTATTGCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACACGATGAAGAAACAGAAGAACTTGACGGCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGATTATTGCGCCAATCACCACTGGGTTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 72681-72980 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820568.1 Lactobacillus sp. HMSC073D04 Scaffold48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 72681 36 88.9 30 NNNN................................ GGCCAGCGACTGGGTGCAACAATTACTGTT 72747 36 100.0 30 .................................... GACTTGGCGGATCTCGTTGTGCTTATTGCG 72813 36 100.0 30 .................................... ACGATGAAGAAACAGAAGAACTTGACGGCG 72879 36 100.0 30 .................................... GGATTATTGCGCCAATCACCACTGGGTTCA 72945 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.1 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : TCAGTTCAAGAACTTTGGCTACAAGCATGACCCAACGGCAGGGGTCTCAGGCAGATGTCAGATCAATCAGTTCAAGAACGTGTCCAACTTAATATCTGACCACTTAATAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTTCTGCCATATCCTGACCCCCTTAAAGAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGAAAAATGTCAATGTGTCGATGACCTGGCTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTCTTCTGCCATATCCTGACCCCCTTAAAGAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGATAAAAGTGATTAGTGTCGATTGGCGTGCGTCTCAGGTAGATGTCAGATCAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGATGGTTTTGCCGTCCGGCTTGACAATCCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGCCAATTGAATAGGCCAGACAAAAATTGCCGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACTGTATTTTGTACCCCCGTGTTACTTGACGGGTCTCAGGTAGATGTCAGATCAATCAGTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACCTTAGAATAGCTTTATTGATTTGGTTATTTGTCTTAGGTAGATG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 73074-73307 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820568.1 Lactobacillus sp. HMSC073D04 Scaffold48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73074 36 88.9 30 NNNN................................ TGATGGTTTTGCCGTCCGGCTTGACAATCC 73140 36 100.0 30 .................................... GCCAATTGAATAGGCCAGACAAAAATTGCC 73206 36 100.0 30 .................................... TGTATTTTGTACCCCCGTGTTACTTGACGG 73272 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : CAATCAGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGCCAGCGACTGGGTGCAACAATTACTGTTGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGACTTGGCGGATCTCGTTGTGCTTATTGCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACACGATGAAGAAACAGAAGAACTTGACGGCGGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAACGGATTATTGCGCCAATCACCACTGGGTTCAGTCTCAGGTAGATGTCAGATCAATCAGTTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTAGATGTCAGATCAATCAGTTCAAGAACCTTAGAATAGCTTTATTGATTTGGTTATTTGTCTTAGGTAGATGTCAGATCAAAAACCTTCAGTGAAACCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCATTGTCAAAAGCAAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGCCCGTAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //