Array 1 64398-63879 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFF01000012.1 Escherichia coli strain MOD1-EC6008 MOD1-EC6008_12_length_135690_cov_28.8519, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64397 29 100.0 33 ............................. TATTCGAGAATATTAATCTGTCTATATATGCGC 64335 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 64274 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 64213 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 64152 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 64091 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 64030 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 63968 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 63907 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81758-79900 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMFF01000012.1 Escherichia coli strain MOD1-EC6008 MOD1-EC6008_12_length_135690_cov_28.8519, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81757 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 81696 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 81635 29 100.0 32 ............................. TTTTCGGTAGTCGCGGCGGCGGGTACGTGATT 81574 28 96.6 32 ....................-........ ATGATCGCCGCCATGATTACTTGCCTTTTTTG 81514 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 81453 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 81392 29 100.0 32 ............................. TGCCAGGAGTGTTTTGATAAATATATTAGAGA 81331 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 81270 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 81209 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 81148 29 100.0 32 ............................. CGGGCTAGTCCGTTGTGATCGCTGCGGCCACG 81087 29 100.0 32 ............................. ATTATCAGCGTTTACTGAATATCGATCATTAC 81026 29 100.0 32 ............................. TTGGCTGGGGCCGGAATCCGGCTGGCGGGGAT 80965 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 80904 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 80843 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 80782 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 80721 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 80660 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 80599 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 80538 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 80477 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 80416 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 80355 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 80294 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 80233 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80172 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80111 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80050 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 79989 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 79928 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATATATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //