Array 1 9064-7511 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXB01000006.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4478 NODE_6_length_213170_cov_52.086743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9063 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 9002 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 8941 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 8880 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 8819 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 8758 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 8697 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 8636 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8575 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 8514 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8453 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8392 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8331 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8270 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8209 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 8148 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 8087 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 8026 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 7965 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 7904 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 7843 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 7782 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 7721 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 7660 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7599 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7538 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8591-9108 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXB01000014.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4478 NODE_14_length_120068_cov_49.269124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8591 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 8652 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 8713 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 8774 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 8835 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 8896 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 8957 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 9018 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 9079 29 93.1 0 ............TC............... | A [9106] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //