Array 1 121558-123098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQM010000006.1 Alistipes shahii strain 1001095IJ_161003_G7 NODE_6_length_127610_cov_28.6589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 121558 36 100.0 30 .................................... GGTGATGCAGGAGATGACGGCACAAGGCCG 121624 36 100.0 30 .................................... TCCACCAGGCATACATCCAATTCCCGGCCA 121690 36 100.0 30 .................................... CATTCACGATAGGTAAGGGCTTCGGCCAGA 121756 36 100.0 30 .................................... CTACCAAACCGCTGTCCGTCGTACCTATTA 121822 36 100.0 29 .................................... CTGCGAATAACTATAAAAATTCCGAACGA 121887 36 100.0 29 .................................... AACGGAAAAGCAGAGGAGATAAGATAACC 121952 36 100.0 29 .................................... GCTGATCGAATCTCGTTGTACAAACAATT 122017 36 100.0 29 .................................... CTGCGAATGATTATCTTGTTCGTTGCCGC 122082 36 100.0 29 .................................... CGGTCGAAGGTGCGTATGATGGATTAAGC 122147 36 100.0 30 .................................... AAATAAGCATCAAGGAATTCAAGATTTCCA 122213 36 100.0 30 .................................... AGCGGAACGAATTGTGTTATAAAGGACATT 122279 36 100.0 29 .................................... TCTTATCATGAAAGTCTTTAAGAGACATA 122344 36 100.0 30 .................................... TCTGTCCGAGCTAATCCGAACAGCCTTCAT 122410 36 100.0 29 .................................... CATAGCAAATATGCCGGGGTCGTTTTCCA 122475 36 100.0 29 .................................... AACGGAAAAGCAGAGGAGATAAGATAACC 122540 36 100.0 29 .................................... GCTGATCGAATCTCGTTGTACAAACAATT 122605 36 100.0 29 .................................... CTGCGAATGATTATCTTGTTCGTTGCCGC 122670 36 100.0 29 .................................... CGGTCGAAGGTGCGTATGATGGATTAAGC 122735 36 100.0 30 .................................... AAATAAGCATCAAGGAATTCAAGATTTCCA 122801 36 100.0 30 .................................... AGCGGAACGAATTGTGTTATAAAGGACATT 122867 36 100.0 29 .................................... TCTTATCATGAAAGTCTTTAAGAGACATA 122932 36 100.0 30 .................................... TCTGTCCGAGCTAATCCGAACAGCCTTCAT 122998 36 100.0 29 .................................... CATAGCAAATATGCCGGGGTCGTTTTCCA 123063 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 29 GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Left flank : AAAGATTGCATATCCTTTATTGGAGTAGTCGAATGTCAGAAGTACGCTTGAATGCTTATCGAATCATGTGGTTGTTTGTCTTTTTTGATTTGCCAACCAATACAAAAACGGAACGACGTCATGCGGTGCAATTTCGCAAGGCGTTGGAAAAAGATGGTTTCACAATGATGCAGTATTCAGTCTATGTGCGCCATTGTGCATCGAAGGAGAATATGCAGGTTCACATTAAGCGGGTTCGACGATCGATGCCTCCGACAGGATTTACAAGTATTCTTGCTGTAACGGACAAACAGTATGGAGACATATTAAATTTTTGGGGTAAAAGCGAACGAGCAAAACCGGAAATTCCGCAACAATTGGAATTTTTCTGATAAATCGTTATTTTCGTTCTTTGAAATACGGAAAATGCATCAAACTGGCTTCGTCGGAACACCCGATCGTATTTTTATAGTGGCAGACAGCCCGTAAGTAACACTTTATCAATCAATATGAGGCCCGAC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGATACAACCATAGCAAATATGCCGGGGTCGTTTTCCAGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACTCCGTCCCATGTAAAAGAATTACTACCAATGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACACGGAACCGGACACCGCAACCAAGTGAAACGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACATCAGTTCGTCGAACTCGACACGCACGAACGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACACACACGGCATTATCAAAAATGACAGCTACGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACGATCTGCGCCTTGCAAATCTTCTCGTTCGTGTTGTGGTTTGATGTAGAATTTCGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 123240-126950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMQM010000006.1 Alistipes shahii strain 1001095IJ_161003_G7 NODE_6_length_127610_cov_28.6589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 123240 36 100.0 30 .................................... TCCGTCCCATGTAAAAGAATTACTACCAAT 123306 36 100.0 30 .................................... ACGGAACCGGACACCGCAACCAAGTGAAAC 123372 36 100.0 30 .................................... ATCAGTTCGTCGAACTCGACACGCACGAAC 123438 36 100.0 30 .................................... ACACACGGCATTATCAAAAATGACAGCTAC 123504 36 100.0 30 .................................... GATCTGCGCCTTGCAAATCTTCTCGTTCGT 123570 36 100.0 30 .................................... GCAAAGCTCCGACGGATGTCCGCATTCACG 123636 36 100.0 29 .................................... AATCGGAAAAACGGCGGATTTGTGCCGGA 123701 36 100.0 30 .................................... TGCGTCGTATCTGTTTAGCCAGCCTTTGCC 123767 36 100.0 30 .................................... GATTTCTGAGGCACTCTTTGTCGTCCATAG 123833 36 100.0 29 .................................... GGGGCAATCAGCGATCTGACAACATACAT 123898 36 100.0 29 .................................... CCCTTCCCTTCGTTTTCCGACTGCGTAGA 123963 36 100.0 30 .................................... AGGAAGCGCAACAAACTGATCGCGCTCAAT 124029 36 100.0 29 .................................... CCATACTTGCAAACAATGCGAGGCGGAAA 124094 36 100.0 30 .................................... GGGCTTTCAATTCCGATTGGATGGCGATTA 124160 36 100.0 29 .................................... ATCTTTGAGACGGAAGAAATCCTCCCGAC 124225 36 100.0 30 .................................... AGCGCATCTACGATACCGTAGACGCTATTC 124291 36 100.0 30 .................................... TTCCTGACCGAACAAGGCATACCCACCACC 124357 36 100.0 30 .................................... TTTTTCGGACGGAATATCAGCCGGCGAAGC 124423 36 100.0 30 .................................... AGTGACCGACGGCGCACTGCCTTTACATTT 124489 36 100.0 30 .................................... GCCCGATCCAAAGAGTTGGCCACCCTCTTC 124555 36 100.0 30 .................................... TATGGACGAATCCAGTCCTCCTGAAACCAA 124621 36 100.0 30 .................................... AGCTCGGTCCCCTTGGAGGAGAGGTGCAGA 124687 36 100.0 30 .................................... CAAACTGCCGGTGATGACGCTACGGGCAAA 124753 36 100.0 29 .................................... AGTATGTGTTTGTATAGCAGAATAGGGAA 124818 36 100.0 30 .................................... CTTTTACGCGTGCGTCCGGCGCCTCCGGCA 124884 36 100.0 29 .................................... ACGAGGTTGCAGACTATGAACGATTTCCA 124949 36 100.0 29 .................................... GCCGTTGCGTTTCCTGCGCTTTTGAGGAA 125014 36 100.0 29 .................................... TTTTGGTCGTCGTCCAAATTAAGCCCAAA 125079 36 100.0 29 .................................... GTTAGTAAATGCGTATTACTGGGCGCTCA 125144 36 100.0 29 .................................... GCTTGGCGTTCTGCCCCTCGGCCTGCCAG 125209 36 100.0 30 .................................... CCTCCCGGAATGATGTAGATCGGCGTCACC 125275 36 100.0 30 .................................... TTTATCCAGCGAATATAGAATGGGTTGCAA 125341 36 100.0 29 .................................... ATTCATTTCCAAAATCAATTCATACAACA 125406 36 100.0 30 .................................... CCATGTCCTCTCTGTTCCGCCCGAGACATT 125472 36 100.0 29 .................................... CATGTTCAACAAGAGTGGCATTGCTACCA 125537 36 100.0 30 .................................... CGCGGTTGTTGTCCACCTTACTTGCAAGGA 125603 36 100.0 29 .................................... GCCAGCATTGTGAATTGCGGGGAGTTTCA 125668 36 100.0 30 .................................... CCCATACTTGCAAACAATGCGAGGCGGAAA 125734 36 100.0 29 .................................... AAAAAGGTCTGCGGCCGGATGAATAGCCA 125799 36 100.0 29 .................................... AGGCCACGCTTAAGGGGGCGAATGTATCG 125864 36 100.0 29 .................................... CGATCGAAATTAAGGCCGCCGCGGTTCTT 125929 36 100.0 29 .................................... TCCGGCTTATTAACATAAGGTGAAGATTT 125994 36 100.0 30 .................................... AAGTAGGGTTGCAGCAGTTCGAAACAGCGT 126060 36 100.0 29 .................................... AGCCATAGTAATTTCGGACGATGTCCCAG 126125 36 100.0 30 .................................... ATTACGCTGACGACGCAAGCAGTCCTCGCA 126191 36 97.2 30 ....................C............... TCAAACTGTTTTTGCCAGTTAGCATAAGAA 126257 36 100.0 30 .................................... GGAGACGTGATTACGTCCTCCTTCTTGTTT 126323 36 100.0 30 .................................... CGGAAGTCGCACCAGTGGGAATAAGACGAC 126389 36 100.0 30 .................................... TTTAGCTGCATTTACAAGACGCGCTTCGTC 126455 36 100.0 30 .................................... GATAAAACGGTAGAAACCTGCGGCTGTCTT 126521 36 100.0 29 .................................... CGCTTGTGAGTAGCCTTCGCCAGCCACAC 126586 36 100.0 30 .................................... CGGACGGCCAGGAAGAACATCTACAGAGCC 126652 36 100.0 30 .................................... TCGAATGTCGCAGGTTGCGCAATCCCCGCC 126718 36 100.0 30 .................................... TCTGATAGCGGGCAAAAACCTTCGAAGGGT 126784 36 100.0 30 .................................... TTCAAGATTTCCGTAACACCGTGAGAAGAA 126850 36 100.0 29 .................................... ATAAAGTAAATTGTATACATTTGCAGTGT 126915 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ============================== ================== 57 36 99.9 30 GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Left flank : GGTTTGATGTAGAATTTCGATAAGATACAACAAATAAGCATCAAGGAATTCAAGATTTCCAGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACAGCGGAACGAATTGTGTTATAAAGGACATTGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACTCTTATCATGAAAGTCTTTAAGAGACATAGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACTCTGTCCGAGCTAATCCGAACAGCCTTCATGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACCATAGCAAATATGCCGGGGTCGTTTTCCAGTTGTGGTTTGATGTAGAATTTCGATAAGATACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGATACAACCATAGCAAATATGCCGGGGTCGTTTTCCA # Right flank : CCGGCAGTATTGGAATGCTGCATAATTGCAACTGTTGTTTACATTACCCTTTTGACTCAAGAAGATTTCAAACTCCCTTAAATACGTCAAATCCAATTCATCAAAACGCATATTGACCGAGCGGAATTGCGACACAAGGACCAACGTTACCTTATGTTTGCTGGCGGAACTGTACTTTTCGACTTTTTCCAAGCGTTCGATAATCTGTTTGAAGTACTCCCCGACCGTGCAGTTGATTCGTTTGCCGTTCTGTTCAAACAGCGTATCGAATGTAACGGGAATTTCCAGCACCTCCAACTTTTTGATTTTCTTCTCGTATTCACGTATCTTGGAGGTTATTTGAAACTGTATTTCTGCTCTATCGGGGCAGTCGGCGGTAGGTTGTTGCTTGTCGAAATCCCAATGCACCAAAGCTTCCGAAATGCCCAGACCGACGAACTTACGGCGGCGGTCATGGGTAAAGACAAGAGCAAGAGGGGCTAAACGGTTTCTGTTGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //