Array 1 522771-521943 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPD01000001.1 Listeria fleischmannii subsp. coloradonensis strain NCTC13938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 522770 36 100.0 30 .................................... TTTTTCATCTCTATTTCGCTCCTTTTATTC 522704 36 100.0 30 .................................... CTCCCATTCAAAAATAGCGTTGGATACACC 522638 36 100.0 30 .................................... AGTTAAGTTCGATTTTATGACCCTTATATT 522572 36 100.0 30 .................................... TAAAAAGCCCTTTGCGAGCCCATCGCCATT 522506 36 100.0 29 .................................... CTTGTATATTTCAAAAGACTTAGTGGCAA 522441 36 100.0 30 .................................... AACTTCATCCGTGGTGGTGCAATCACTATT 522375 36 100.0 30 .................................... CCAGTTGGGATTGCAATAATAATTCAAAAG 522309 36 100.0 30 .................................... TTCAAAACTAAATTCACAGAATCCGAAATA 522243 36 100.0 30 .................................... TAACTACCATTTGGCTTCTTGTAACTCACT 522177 36 100.0 30 .................................... TTTTCAATAGAATAGTTGTCTTGAATTTGT 522111 36 100.0 30 .................................... TTGGATTTGTTCGGCCGCTCTGGCAATTTC 522045 36 100.0 30 .................................... ATATAGGCTTGCAGAGTATCACTTGTACAT 521979 36 86.1 0 .............................A..TGGA | T [521948] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TTCTTCTACGACATCATCCAGGTAAGATACACCCCGACGCTTAGCCAAATGTGTCAGTGCTACATAAATCTCTGAAACTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTCATAAGGATTTTCGTTCACGATATCACAAATATCCATATCATGCGCCAAAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGGCTTGTCCTTCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGTATCTACGACATCACCATTTTCAGCATCTATAATCCCCATCCTACAGAAGCCACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGGTATAATAAAACTAAGTAGTTTCTAAATCCTCATTTTGACGAATTTGAG # Right flank : AATATTATGATTCGCGCCGAGTTTTAACACTCTCAAAATTTTATTTCCCATACGTTTCCTAAAAAATCACAAAACCATTTGCGTCTCCAAAATCTAATTTTGGAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCGCCTGATTAAAATGGCAGTTTGAAATTGCCGAAAGGATTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTAACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATAATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGTCCAAGTTGTTTATCGTCGACTTGCATATTATCGAGGCCTTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 528694-529521 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGPD01000001.1 Listeria fleischmannii subsp. coloradonensis strain NCTC13938, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 528694 36 100.0 30 .................................... AAAGATTAGCATTTCCTGTGGAAGTGAGTA 528760 36 100.0 30 .................................... GTTGCATTCTCTATTTTCAAACAACTATTG 528826 36 100.0 30 .................................... ACCACCCCAAGCAAACGTATGCGGGACACC 528892 36 100.0 30 .................................... AATTTATTAACCATATTAAACAAAGTAATT 528958 36 100.0 30 .................................... TACCATAACTATCCACCATGTTTCTTAGCG 529024 36 100.0 30 .................................... CCAATCCCGATGCCAAAGCAAATCACGCCT 529090 36 100.0 30 .................................... AGAGTGGGCAAAGGGTAACGCGCTTAGGCA 529156 36 100.0 30 .................................... ACAAAAAGGATACTGACAATCAGTAAGGGA 529222 36 100.0 30 .................................... TTCAACGGCGATGTTATGACGCTTGCAGCT 529288 36 100.0 30 .................................... AGCCATATATGAGCTCATACGACAATTACA 529354 36 100.0 30 .................................... TACTTTCGCCGTGCTTCCCTCTTGTGATGT 529420 36 100.0 30 .................................... ACGAAACTAAGCGAGAAATTGTCACTGTGT 529486 36 88.9 0 .............................AC...TT | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TAAAAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGTCAAATCGGATATGTTTACATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCACATTCGCTCGCGGATGGTCGTAATTTATATACACGTGTTTGCGCCTATTACCCAGATCAAACTATTCCTAGCTACAACGAATTTTTGGGGAGACTAAAAATGATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATTCAAATGAATGTAAAAGAACTGGTTTTAATTAAAATCATTAATGAGCTATTCCAGTACTTTGACCTTATACCAGTAGCAGTATTACAACATAGTCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : TATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTGTTCTCAGATATTCTTATGATTTCATGTAAATAAAAAATGCTAGAGGCAGACTATTCGCTGCTTCTTTATTGTATCCAAATAACTATGTCTAAATAGAACTAAAGTCTATCCACTGTGTTCAAAAGCCTGATTTTATATAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTATTCATCAAGAGTTTCTCTAATTAAGATAAGGGGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTGCCAAAGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAGCAAATCGCAAAGGCAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAAGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //