Array 1 218268-216370 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOZ01000006.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-126-15 126_15_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 218267 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218206 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218145 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218084 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218022 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 217961 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 217900 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 217839 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 217778 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 217717 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 217656 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 217595 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 217534 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217473 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217412 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217351 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217290 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217229 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217168 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217107 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217049 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 216988 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 216927 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 216866 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 216805 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 216744 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 216683 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 216622 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 216521 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216460 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216399 29 93.1 0 A...........T................ | A [216372] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236166-234550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAOZ01000006.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-126-15 126_15_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236165 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236103 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236042 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 235981 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 235920 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 235859 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 235798 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 235737 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 235676 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 235615 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 235554 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235493 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235432 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235371 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235310 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235249 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235188 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235127 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235065 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235004 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 234943 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 234882 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 234821 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 234760 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 234699 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 234638 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 234577 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //