Array 1 106449-106000 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXP01000071.1 Pseudomonas aeruginosa strain ENV-480 PA4_B3_NODE_10_length_178396_cov_16.6391_ID_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106448 28 100.0 33 ............................ AGGCGCTGGACTCGCCCCCTGGGCGGCTTCGCT 106387 28 100.0 32 ............................ TTCGACTCATCACCCACACCGCCCGTTTCGGA 106327 28 100.0 32 ............................ GGCAAGCGTGTTCTTCAGGTCCTGAATCTTCT 106267 28 100.0 32 ............................ TGGGAGATTCTGCGCCGAGGCGGCAACCGCCT 106207 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 106147 28 100.0 32 ............................ TCGTATTCCCCGCCGGCTACACTTTCCCATGC 106087 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 106027 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAAAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : GCCGGCTGCGTATCCCAGTGATGATGGGGGGTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110736-110288 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXP01000102.1 Pseudomonas aeruginosa strain ENV-480 PA4_B3_NODE_15_length_110784_cov_20.078_ID_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 110735 28 100.0 32 ............................ TGAAAACCCAAGCCAAAGTGGCAATTCGGGGC 110675 28 100.0 32 ............................ TGACCGAGAGCTCCAATCTCACCCCGAACCCG 110615 28 100.0 32 ............................ TTGTGGAACTGTGGTATCGCCGCTGGGTGCAG 110555 28 100.0 32 ............................ AAGCAAGGACGTGCAGCATCTCATCGACGCTG 110495 28 100.0 32 ............................ AATCTCACACCGAACCCGTCGGCAACTACGTT 110435 28 100.0 32 ............................ AGCCGCGGCTGGTGGGACGGGTCCAGGTCCAG 110375 28 100.0 32 ............................ ATTCCAGGCGGACCCAGACTTCATCCGGTTGC 110315 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCT # Right flank : TCGCAAGCGATATCGACCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATATCCCGGATACGCGGCGGATAACCGCAAGCGGTTATCCGCCCTACGGAACCGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGCAGTCATGCTCACTCGCCAAGTGGTGGGGCGGCGAACCCGCCCCGTCAGGTGGCCGAGCGGAATCGTTGCGCAGGGGGACGAGCGGCAGGAAGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCACCGGGAGCAACGATGTAGCGAGGGCACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGGACTCGCCTGGGAAGACGAAACAAGAAGTCGAGGCAGGTACAGCAACCAGCTAGACCACCAAATCTGAAGCCCGCTCAGGCTCTAAGCGACATCCTCCCCCAAGTTGCCAACTGCCGTGTAGGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97470-96841 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXP01000082.1 Pseudomonas aeruginosa strain ENV-480 PA4_B3_NODE_21_length_97593_cov_12.8353_ID_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97469 28 100.0 32 ............................ AGGGTCGCAAACGGACGGTTTCTGTAACTATC 97409 28 100.0 32 ............................ AGTCCGGACGCTGGGCGATTTTCCGGACTGGT 97349 28 100.0 32 ............................ CGGAAAATCGCCCCGCGCCGGGCGAGCATTTA 97289 28 100.0 32 ............................ TCCGGTCATAGGGTAGGGGGAAGCTTTTCTCC 97229 28 100.0 32 ............................ TGCTGGCGAAGCTGGATCGACCGGTACTGACT 97169 28 100.0 32 ............................ CTGCTGATCGAGGCGGCCAAGCGCGCCGGCAG 97109 28 100.0 33 ............................ TGGATAAACCCGCAGTTGGCCACCTGCCGGAAT 97048 28 100.0 32 ............................ TAGCGATTAAGCCGGCTGGCCCTTGGGGGCAA 96988 28 100.0 32 ............................ TACTACCGGAACACGCAGTCCGGAACGCTGAT 96928 28 100.0 32 ............................ ACGGGGAGCCGGCATGAAGCTGATCGACAACT 96868 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGGCTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCTCCGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9780-8792 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXP01000108.1 Pseudomonas aeruginosa strain ENV-480 PA4_B3_NODE_47_length_47245_cov_13.3973_ID_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9779 28 100.0 32 ............................ TGACATGACAGCCAGCCAATTAAACCCCGAGC 9719 28 100.0 32 ............................ ACAAAAAAGCCGCCGAAGATCAGGACTTGGGC 9659 28 100.0 32 ............................ TGAAACCAGTCGAAGTCACCAGTCAGAACCTC 9599 28 100.0 32 ............................ ACGAAGGAAATCGCTGGATGATCGATGGCCCA 9539 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 9479 28 100.0 32 ............................ AAATGCCCAGACTGCGGCAAAGGCGATCTGAT 9419 28 100.0 32 ............................ GTCTGAGTACTGCCGAACCAGGGGAACGAGAA 9359 28 100.0 32 ............................ AGAAACGGGGGCACCGCTGGTGGTATTGAGCG 9299 28 100.0 32 ............................ ATCATCGACACAGCGGGCCACGGCCATGACTA 9239 28 100.0 32 ............................ GAGCTGCTCGGCGACATGAAAGCGGTCCGCGC 9179 28 100.0 32 ............................ TGTGCGGCTACCGCGGCCCCATCGAACGGCTG 9119 28 100.0 32 ............................ TAAATTGCCCGAGTCCGCCGAACAACTCTGGC 9059 28 100.0 32 ............................ TTCCACGGCTCCTTCGAGGACGCGGTATCCGA 8999 28 100.0 32 ............................ AGCGTGACGCAGCCGTGCCCGGCCTGCTCGCA 8939 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 8879 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 8819 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGTCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAACCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50-258 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXP01000066.1 Pseudomonas aeruginosa strain ENV-480 PA4_B3_NODE_59_length_28992_cov_18.5383_ID_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ ACCAGGGCATCCCACATCGAGCGATTGATTGA 110 28 100.0 32 ............................ AGAGGGGCAGCGCCCCTTTGGGCAAGGGCGAA 170 28 100.0 32 ............................ ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 230 28 82.1 0 ......................G.CTTC | C [249] ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTAG # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGCGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //