Array 1 28967-29445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJX010000012.1 Listeria seeligeri strain FSL W9-0583 NODE_12_length_91924_cov_74.040567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 28967 29 100.0 35 ............................. ACTAAAAAAGAACATATGTACGAAAGGAGCATGAG 29031 29 100.0 34 ............................. AACAGTGACACCCCAATCATCAGCAAGAGCTTTC 29094 29 100.0 37 ............................. AACATTACCGGTTTTTGAACCGCAACGATGAGTTGTT 29160 29 96.6 34 .....................G....... TTAATTATTGAAGCTGGAATCGAACTCCTTTTCG 29223 29 100.0 37 ............................. CAAGTTAGTCGGCTCATTTTAAAATGGTTAGCGAAAC 29289 29 100.0 34 ............................. CATTTCATCCAATTGATTCAATAATAAATTATTC 29352 29 96.6 36 ............................A ACATCGAATTAGATGGATTTATAGTGACCCCTTTTA 29417 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GAGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGTATTCCTTTGTGGGAGAATAGGTTTGGTGGATTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 35698-36571 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJX010000012.1 Listeria seeligeri strain FSL W9-0583 NODE_12_length_91924_cov_74.040567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 35698 29 100.0 37 ............................. CTCCTAACCAATCCAGATTTAATATAGTGCTGATCAC 35764 29 100.0 37 ............................. CTTGGTCGAGGAGATTCAAAAGGATGTTTTTAGAAGT 35830 29 100.0 34 ............................. AAGGCTTTTAGTATCTTGTCAATAAATCCTGTTA 35893 29 100.0 35 ............................. AGGGTTTCAAGGAAGAACACGGAGAAAATATCAAG 35957 29 100.0 35 ............................. AAAAGAAAACAGGCATGGGTTAATAAAAAATATGG 36021 29 100.0 35 ............................. AAGCCAAACAATGCCAGCAACTAACAAGGTAATTC 36085 29 100.0 41 ............................. TTTTTTTAGCAGCATTATCAACATCAGTATAAGAGTCTTCT 36155 29 100.0 35 ............................. CCATATCCTATTGAGACTAGGAGCAAACGCCATTA 36219 29 96.6 35 .......................A..... ACAAGTGGCTTAATATAATACGTTGGTGCTATAGG 36283 29 100.0 36 ............................. TAATCAGAAATTTTATAAAAATTATCGAAAGTTTTA 36348 29 100.0 36 ............................. TCAGCAACCAATCCAAAATGGATTGATAGCATCAGT 36413 29 100.0 37 ............................. GAATTAGTAACACAATTAGATCCAACTTCTATTACCC 36479 29 100.0 34 ............................. CAACAGCAGATGACTGAGTAATCTTTTCGTTCTC 36542 29 86.2 0 ........C....C..A...........G | T [36568] ========== ====== ====== ====== ============================= ========================================= ================== 14 29 98.8 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTCCAGTGTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 45184-46515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJX010000012.1 Listeria seeligeri strain FSL W9-0583 NODE_12_length_91924_cov_74.040567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 45184 29 100.0 36 ............................. AAAATCAAAAGCTAAAGTTATTCTCGCAAGTGCTGC 45249 29 100.0 37 ............................. AAGAATATGTGGGACTCCGTGAAGCAGGAGCGAGTTC 45315 29 100.0 36 ............................. ACAGTAGTTGTGAATGACCAGTTACTGAAATCACGA 45380 29 100.0 35 ............................. GAAGTTATGTGACCTGATTGAGGAATACTACAACG 45444 29 100.0 36 ............................. AACACAAGGTGACAATTTACAAACACAATTCGACAG 45509 29 100.0 36 ............................. ATTCTTCAATCGGAACTCCAAAATATTCGAGTACAA 45574 29 100.0 37 ............................. TGTTGATATTAATACCTAATCCTGACCAGTTCATGAC 45640 29 100.0 38 ............................. TTTTATGAAAAGTTGATTCAAGATACTTTTTCGAATGC 45707 29 100.0 36 ............................. CTAATCAAGCTAATCGAGACTCTCAAAAAGAGGTCA 45772 29 100.0 35 ............................. AAGTCCGAATCAGTGATTTGGTCTTCATACTGCCT 45836 29 100.0 37 ............................. CTCGTTAGTGACTACTTTCTCTCCATTTTTTGCGATA 45902 29 100.0 38 ............................. TAACTCCGTTGCCTTGCTGCTTAGATAATTCCATTCCT 45969 29 100.0 36 ............................. TACACCACCTTTGAAGTGGAAAGTTCCAAGGAAGAC 46034 29 100.0 35 ............................. AATAACTTCTACTCTGTCACCTTTTTTAAATTTCA 46098 29 100.0 36 ............................. ATCACAAATGGAGCGGCTAACAAGGTCTTAAAAGAA 46163 29 96.6 35 .......C..................... AATATGCACCAAATGAGCTATTGCAAATCATGGAT 46227 29 100.0 36 ............................. ACCGGTATTTTCATAGATTTAAGTTTCGCTGGATCA 46292 29 96.6 36 .......C..................... AAAAAAGAAATGCGCAAATGGTTTATGCACGTTATC 46357 29 96.6 36 ............................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 46422 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 46487 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGATGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGGGAGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATCGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //