Array 1 142131-140881 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000020.1 Corynebacterium striatum strain 2130 Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142130 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCGAGGCGT 142069 29 96.6 32 ............................G AGGAGCGCGCTAAGGCTGCTGACAAGGTCAAG 142008 29 96.6 32 ............................A ACCTTGTGGGATTCGCGTGAGCGCGCCATCGG 141947 29 100.0 32 ............................. TCAGGCCCCTTGCCCTCGCACTACTCGCACAC 141886 29 100.0 32 ............................. TGAAGAGTTTCTGGTCCGTTCGTATATCCGGA 141825 29 100.0 33 ............................. CGACGCGCCACTAGGGCACGTCACCTTCCCGCC 141763 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCGAGGCGT 141702 29 96.6 32 ............................G TCCGCAAGGGTTGCGAGTTCTGCCGGGTCAAG 141641 29 100.0 32 ............................. AGGTCATCCGCGAATTCGCGCAACACTACATC 141580 29 96.6 32 ............................G TACAGGTGTTGAGCATTGGCAGTAAGTGCCCG 141519 29 100.0 32 ............................. CTCAGAATCAAAAAGGAACTAGACCAATGACC 141458 29 100.0 32 ............................. GTGCTTAGGGCTGTGATTAATCAAATTCAGGT 141397 29 100.0 32 ............................. GATCCCTGGATACTGCGCTTCGACGTGCGCAC 141336 29 100.0 32 ............................. GCGGTGAAGTACGCCGCCCGGGCGGGCCGTAC 141275 29 100.0 32 ............................. GGCAAAAACGGCCGCGTCTACCTCAAGGATGA 141214 29 100.0 32 ............................. GCGCCGCATAACAGCAGGCTGCACACGCTGCA 141153 29 100.0 32 ............................. AACGGGACTGCCATCCCATCCCAACCACCGAA 141092 29 100.0 32 ............................. GAAAGATAACGCAGAATGCGTAAAATTTTCTC 141031 29 100.0 32 ............................. TAGAACGCTTAGGAGATAACAATGGATCTTAA 140970 29 100.0 32 ............................. CTAGGGCGGCGCGGCTACGGCTTCGAAATCAA 140909 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.4 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : ATTTGGTTGTGTTTGGTGGCCACGAAGCCTAAGTCTGTTATGTCCATGGGCTTTTTGGACACGGAGTCCAGTAGCTTTTTGGGCTAGGAGTCCAATGACTTTTTGGACGTGGAGTCTCCCTGCTTTTTGGGCAGGGAGTCTTTGGTGTTTTTGGACAGTCTCTAGCTCGTCTTACCGGTTATGGTTTCTTTCGTCTCGACGGGCGCGGACGCGACAGGATTGGTTTGATCTCTGGTGGCCGGCGGTGCCACATTCCTTCGACATGCCCGATGTTGATCTGTCCGCCGGCTGGACGCTCAAGTAGCTTGATGGGCAGTGGGAATGAAAACAGTGCTTCACCATCATGATCAGTGAAGAACTCAGCGGTGTCATCGGTAACGTGGCTGTATATGAGCCGGTTTTTAAACCGGAGTCCTACATAGAATCCATAGCCCAGGATGCGCACCACTCCGCTTTTGTTGATCCACAGTGTGTCGGGGATACCCCAGGCGTTGCTTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106-3367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000012.1 Corynebacterium striatum strain 2130 Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106 29 96.6 32 ............................G TAGAGCCATTGGGCTAGGGATGTGAGTTCGCG 167 29 100.0 32 ............................. ACTAGCAGTCACATCCAAGAACAGAGGAGAGA 228 29 96.6 32 ............................G ATGCCGGCCATCACGCTATCCGGTGAGCTTCA 289 29 100.0 32 ............................. AACGCGAGGTTAGCCCACCTCGCCCTTTTTTA 350 29 100.0 32 ............................. ACCGGACTCAGCTGGAAATGGGAGGAAGCATG 411 29 96.6 32 ............................T TCGCGGATGACCTGTTCGCTTGTGGTCATCGG 472 29 100.0 32 ............................. AAGGTCGCCCACACCACGGATCAGTGATGCCA 533 29 100.0 32 ............................. ACTAGCAGTCACATCCAAGAACAGAGGAGAGA 594 29 100.0 32 ............................. AGTGAGCCGATGACGTTGGGGTGGTGTGGTTG 655 29 100.0 32 ............................. GCCCCAAGGCAAAAAGCCCCAACCAACACCAC 716 29 96.6 32 ............................T TCCGCCTGCCTGCAATCACACCGGGGCGCCCA 777 29 100.0 32 ............................. CGCTTATGACTTTGCCGGAGCCGTTGGGGGAT 838 29 100.0 32 ............................. GGGCGCCAATATTGACATGGGCAAGGTCGACA 899 29 100.0 32 ............................. CGACAAGGGCCGCGCAGCCCTGATAGCGATGC 960 29 100.0 32 ............................. GCCCCACTGTTGCAGGGTTTCGGAATGCCCGG 1021 29 100.0 32 ............................. GGTGCCGTTGGCGACTTTGATGTAGCCGAGTT 1082 29 96.6 32 ............................T TAGTGACCGTCACCGTACCAGTGCCGTACTGC 1143 29 96.6 32 ............................G TAAGCGGCGGCAATACCTGTAGTGTGTGAGTC 1204 29 96.6 32 ............................G TTACGTGACCATGTAGAAAAGAATGATTTGCC 1265 29 100.0 32 ............................. GGATCTGCACGTCTAATCAGACTAGGAATGCA 1326 29 100.0 32 ............................. TTATCTAGCTTCACCTCAATACCGTTAGGCGG 1387 29 100.0 32 ............................. TCGCGGATTGCGTCGAGGTCGCCTGCCTTGAT 1448 29 100.0 31 ............................. CCCCATCGGGTGAATGGGTTGTCAGCATTGC 1508 29 100.0 32 ............................. AAACAAGGGCCGCGCAGCCCTGATAGCGATGC 1569 29 100.0 32 ............................. GATCCCTGGATACTGCGCTTCGACGTGCGCAC 1630 29 100.0 32 ............................. CTAACCCTTGTCGATGCCGTGGCAAGTATTCG 1691 29 100.0 32 ............................. AAACGCCTCCGCACAGAGCTAGCGAGTCTGCA 1752 29 100.0 32 ............................. ATCTACGACCGCCTGGGCATAATCTACGCACT 1813 29 100.0 32 ............................. ACCTCCCCATCGAGCAGCTCCGCAACTACAGC 1874 29 96.6 32 ............................G ATAGACGCCGCCTTCGTCGTATGTGACGGATA 1935 29 100.0 32 ............................. TGCGCGGCAAGTGCGCCCTTGCGGACCTCCTC 1996 29 96.6 32 ............................G ATGCCGGCCATCACGCTATCCGGTGAGCTTCA 2057 29 100.0 32 ............................. CGCACCGGGGCACCCGCCGCAATTTACCCCGG 2118 29 100.0 32 ............................. AAAAATCAACAACCACAACCCCATACAGCCAA 2179 29 96.6 32 ........A.................... GGCTGGCCTCAATTAGGGCAGGACAGTCAAGG 2240 29 100.0 32 ............................. GGTGGTGAGTTCTGCCGGGTCAAGGGTGAGGT 2301 29 100.0 32 ............................. AACGCGAGGTTAGCCCACCTCGCCCTTTTTTA 2362 29 96.6 32 ............................T AAGCTCTTTCCGCATCCGTAGGATTTCATCCG 2423 29 96.6 32 ............................T CTTCTACACAAAGGAGCAAGCATGACTATTCA 2484 29 100.0 32 ............................. CCACTGGGGAACTGATTTTGGGCTTTCAGGCG 2545 29 100.0 32 ............................. TCGCGGATGAAATCCTACGGATGCGGAAAGAG 2606 29 100.0 32 ............................. CATCGTCAACGATGAAGGCCGCGCCCTCGAAG 2667 29 96.6 32 ............................T AGGCCCAGACAGCCTAACCAATGCGCGTAGCA 2728 29 100.0 32 ............................. CATGCGGGCCATCCCCCACCGACGCACTCATA 2789 29 100.0 32 ............................. TGCTTGCCAGACAGCCAAAGTCGAACACGTTG 2850 29 100.0 32 ............................. CGATTTCCCCACACACGTAAAAACACCAAGTC 2911 29 96.6 32 ............................T GGTGCGGTGTCGTTTGAGGTGTTGCCTGGGCC 2972 29 96.6 32 ............................G CCTTAGAATCCGCGGCTTTGACCTGGCGCAAC 3033 29 100.0 32 ............................. TGCTTGTCTTTGACGAGTGTTTTAATCTGCCG 3094 29 100.0 32 ............................. ACGTCACGCGGCATAAAGCCTATTTCGTCCAA 3155 29 96.6 33 ............................G TGCACGGTTTGCCACGCGGCATGGGGCTAGTAG 3217 29 100.0 32 ............................. TTCCACCCGTAATAAGGTAGCGGGCTAGTCTC 3278 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 3339 29 93.1 0 ......................A....G. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 98.8 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : AGGAAGTCTTTGGACTCCGTGACCAAAAACTATCTGGACTCCCCGTCCAAAAAGCCATTAGACTCCGTGACCAAAAACTCCATAGACATCACACACGAAGCCTAAG # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-554 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000042.1 Corynebacterium striatum strain 2130 Contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 32 29 100.0 38 ............................. ACTTGGTGGCTCGCGTGTGGGCTATCCGGAGAGCGTCA 99 29 100.0 32 ............................. AACGCGAGGTTAGCCCACCTCGCCCTTTTTTA 160 29 100.0 32 ............................. ACCGGACTCAGCTGGAAATGGGAGGAAGCATG 221 29 96.6 32 ............................T TCGCGGATGACCTGTTCGCTTGTGGTCATCGG 282 29 100.0 32 ............................. AAGGTCGCCCACACCACGGATCAGTGATGCCA 343 29 100.0 32 ............................. ACTAGCAGTCACATCCAAGAACAGAGGAGAGA 404 29 96.6 32 ............................G ATGCCGGCCATCACGCTATCCGGTGAGCTTCA 465 29 100.0 32 ............................. AACGCGAGGTTAGCCCACCTCGCCCTTTTTTA 526 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.2 33 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : ACGCGCCACTAGGGCACGTCACCTTCCCGCCG # Right flank : ACCGGACTCAGCTGGAAATGGGAGGAAGCATGAGAATAATCCTGCGAGCTATTTTCCCCGTCCTCAAGATATACCTTTCCGCACTCCTCATGATGCTGCCAACCGCCAAAGGCATCGACTACGCAGCCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 957-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000043.1 Corynebacterium striatum strain 2130 Contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 956 29 96.6 34 ............................G TAGAGCCATTGGGCTACGGATCAGTGAGTGCGCA 893 29 100.0 32 ............................. ACTAGCAGTCACATCCAAGAACAGAGGAGAGA 832 29 100.0 32 ............................. AGTGAGCCGATGACGTTGGGGTGGTGTGGTTG 771 29 100.0 32 ............................. GCCCCAAGGCAAAAAGCCCCAACCAACACCAC 710 29 96.6 32 ............................T TCCGCCTGCCTGCAATCACACCGGGGCGCCCA 649 29 100.0 32 ............................. CGCTTATGACTTTGCCGGAGCCGTTGGGGGAT 588 29 100.0 32 ............................. GGGCGCCAATATTGACATGGGCAAGGTCGACA 527 29 100.0 32 ............................. CGACAAGGGCCGCGCAGCCCTGATAGCGATGC 466 29 100.0 32 ............................. GCCCCACTGTTGCAGGGTTTCGGAATGCCCGG 405 29 100.0 32 ............................. GGTGCCGTTGGCGACTTTGATGTAGCCGAGTT 344 29 96.6 32 ............................T TAGTGACCGTCACCGTACCAGTGCCGTACTGC 283 29 96.6 32 ............................G TAAGCGGCGGCAATACCTGTAGTGTGTGAGTC 222 29 96.6 32 ............................G TTACGTGACCATGTAGAAAAGAATGATTTGCC 161 29 100.0 37 ............................. GGATCTGCACGTCTAATCAGCCACCGACGCACTCATA 95 29 100.0 32 ............................. TGCTTGCCAGACAGCCAAAGTCGAACACGTTG 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 98.9 33 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : AGGAAGTCTTTGGACTCCGTGACCAAAAACTATCTGGACTCCCCGTCCAAAAAGCCATTAGACTCCGTGACCAAAAACTCCATAGACATCACACACGAAGCCTA # Right flank : CCGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-879 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000056.1 Corynebacterium striatum strain 2130 Contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55 29 96.6 32 ............................T CTTCTACACAAAGGAGCAAGCATGACTATTCA 116 29 100.0 33 ............................. CGACGCGCCACTAGGGCACGTCACCTTCCCGCC 178 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCGAGGCGT 239 29 96.6 32 ............................G AGGAGCGCGCTAAGGCTGCTGACAAGGTCAAG 300 29 96.6 32 ............................A ACCTTGTGGGATTCGCGTGAGCGCGCCATCGG 361 29 100.0 32 ............................. TCAGGCCCCTTGCCCTCGCACTACTCGCACAC 422 29 100.0 33 ............................. TGAAGAGTTTCTAGGTCCGTTCGTATATCCGGA 484 29 100.0 33 ............................. CGACGCGCCACTAGGGCACGTCACCTTCCCGCC 546 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCGAGGCGT 607 29 96.6 32 ............................G AGGAGCGCGCTAAGGCTGCTGACAAGGTCAAG 668 29 96.6 32 ............................A ACCTTGTGGGATTCGCGTGAGCGCGCCATCGG 729 29 100.0 32 ............................. TCAGGCCCCTTGCCCTCGCACTACTCGCACAC 790 29 100.0 32 ............................. TGAAGAGTTTCTGGTCCGTTCGTATATCCGGA 851 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.8 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCGCGTAAGCGGGGATGAGCCTAAGCTCTTTCCGCATCCGTAGGATTTCATCCGG # Right flank : CGACGCGCCACTAGGGCAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIL01000061.1 Corynebacterium striatum strain 2130 Contig_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35 29 86.2 32 C..AT.......G................ ATCTACGACCGCCTGGGCATAATCTACGCACT C [50] 97 29 100.0 32 ............................. ACCTCCCCATCGAGCAGCTCCGCAACTACAGC 158 29 96.6 32 ............................G ATAGACGCCGCCTTCGTCGTATGTGACGGATA 219 29 100.0 32 ............................. TGCGCGGCAAGTGCGCCCTTGCGGACCTCCTC 280 29 96.6 32 ............................G ATGCCGGCCATCACGCTATCCGGTGAGCTTCA 341 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGCGTAGATTATGCCCAGGCGGTCGTAGATGGGC # Right flank : | # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //