Array 1 7030-7851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRW01000197.1 Cronobacter sakazakii strain cro1611A1-1 contig197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7030 29 100.0 32 ............................. CGCTAATTCTATATTTCGTGAGTTATAGGTAG 7091 29 100.0 32 ............................. TATGAATAAGCAGCTATTAGCCCCGGACGGCG 7152 29 100.0 32 ............................. CGGTATTGACGATCCTGATACCTTTTTCAATA 7213 29 100.0 32 ............................. ATGATAGCGAACACGATATGGAGGAAGGACGC 7274 29 100.0 32 ............................. AGTTGGCGGACAATATTAAACGCGATGTGTTT 7335 29 100.0 32 ............................. TCATTGACCTGGGGCCGATTGCCGGTAACCGC 7396 29 100.0 32 ............................. CTCACAACACTCCGGCGTGGTGACGTTGTGAT 7457 29 96.6 32 ..A.......................... GCGCGGCCTGGAGTTTAACCCCGGATACCGCC 7518 29 93.1 32 ..A.....G.................... GTGTGGCGCAGAAAATGAAACGGCTTGAATAC 7579 29 96.6 32 ..A.......................... GTCGAACCTGGTGCCGCGCAGCCCGGCGACGT 7640 29 96.6 32 ..A.......................... CCATAACCGACGGCGGTCATCCCGTTCAGGAC 7701 29 96.6 32 ..A.......................... TGCCCCGCATCGATCAGGTTGCGCAGCCATTG 7762 29 100.0 32 ............................. CCAATCATTAAAACATAAGGAACCACCTATGA 7823 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : CGACACGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTATTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4657-4388 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRW01000289.1 Cronobacter sakazakii strain cro1611A1-1 contig289, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4656 28 100.0 32 ............................ GACCAGAAAACGAGCTGATTGAGTATCGCGGC 4596 28 100.0 32 ............................ ACTGAGGGCTGCTACTACACGCAGCAGATGTC 4536 28 100.0 32 ............................ ATTATTCGCGCTCGTTTTTCTGCTCTGCTCCA 4476 28 100.0 32 ............................ CGAGTGATGTAGATCATTACAGCGCCGGGCTC 4416 28 85.7 0 ......................C.T.TC | T [4394] ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCT # Right flank : CAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAGCCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCACATTTGCCGGTAAAAATGCCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGAAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1160-1860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRW01000162.1 Cronobacter sakazakii strain cro1611A1-1 contig162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1160 29 100.0 32 ............................. CTATCGTGCGGCTTATTCCGGTATGGGAGGCA 1221 29 100.0 32 ............................. CACGTAATTCACGCGGGCGGCGTATTCCCGAA 1282 29 100.0 32 ............................. GTTTATCCGAACGTTTAGCCGGGAAGCTGCTG 1343 29 96.6 32 ............................T CGTGGAGGGGGATTCCGGTAGAGGCGCGATCG 1404 29 100.0 32 ............................. AGCATCGTCCCCGGCTCTGCCTGGTCTGAGTC 1465 29 100.0 32 ............................. TATCCATTTTCATTCCCTCGATAGTTAGTTTA 1526 29 100.0 33 ............................. GGTACATATCTGTCTATCCCACCTCTCAACGCA 1588 29 100.0 32 ............................. TATGGAACGTAAATTTATCGACTGGCACCCCG 1649 29 100.0 32 ............................. CGCAAAAACGGCGGCCCGGTATCAGCGGGTGG 1710 29 100.0 32 ............................. AAATCAGTTTTGCCGCCCGCTGCGCCCAGCGG 1771 29 93.1 31 .T......T.................... TCGGCGGGATTATTGACGCAGCGACGCCGCG 1831 29 100.0 0 ............................. | T [1833] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.1 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAAAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTATAAAGGGTTACCGTTAGTG # Right flank : GAACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCATCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //