Array 1 15317-13960 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAJAFQ010000014.1 Mannheimia haemolytica strain XJ-Mh1 NODE_14_length_76377_cov_273.235855, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     15316	    32	 100.0	    34	................................	TTTTAACTTTGCTTTTAACTCTTATTAAACGCAT  	
     15250	    32	 100.0	    34	................................	AATTTCAAAAAGTTCAATTTTACCGCTAATTGGA  	
     15184	    32	 100.0	    34	................................	TTTCGATCTAAGCTGAAAAAGTCTTCGATCTATT  	
     15118	    32	 100.0	    36	................................	TATATTCCTCAAGCACTCGGCAAGCGTCTGCCAAAA	
     15050	    32	 100.0	    35	................................	CCACAGGAAACGGGTATTTTCGACCGTCAAAACTA 	
     14983	    32	 100.0	    33	................................	AATTTTACCGCTAATTGGACTATCAAAAAATAT   	
     14918	    32	 100.0	    35	................................	TATGTGAAATTTGGCGATGAAACAGATATTGCGTT 	
     14851	    32	 100.0	    33	................................	AACGATTTTATATATAATTTGCCAAAACCATAG   	
     14786	    32	 100.0	    34	................................	TACTATTACCGGCGGATATATCCGCCAACGTAGA  	
     14720	    32	 100.0	    36	................................	TGTAACTTGCATAAAATACCTCTTTTTTGGTTATTG	
     14652	    32	 100.0	    33	................................	AAAAAGTCCATCAATTTGCAAAGTACAATTTGT   	
     14587	    32	 100.0	    36	................................	TATTTAACATAATGTGCGTTATGCGATCTATTATAG	
     14519	    32	 100.0	    34	................................	ATTTTTTACACCTCTTTTTTGTTGTTTAACTTGT  	
     14453	    32	 100.0	    34	................................	CATATTGCCCACGTATAAGCCATAGCCAATCCCT  	
     14387	    32	 100.0	    33	................................	GATCCATACAGTATTTTGCTTTAGATCGAACGT   	
     14322	    32	 100.0	    34	................................	TTTACAAAATTCTACAAATCTCGTAAGTTCTGCC  	
     14256	    32	 100.0	    35	................................	GCTTTAGATCAAACGTTCGATCTAAATGGAACAGA 	
     14189	    32	 100.0	    34	................................	CCGACAATATGGCGTTATGGGACGAATGGGAAAA  	
     14123	    32	 100.0	    33	................................	TTTTCACCCACAGGGTACATTAGCCCTGTGTGG   	
     14058	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 	
     13991	    32	  93.8	     0	..........T............T........	|                                   	
==========	======	======	======	================================	====================================	==================
        21	    32	  99.7	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                    	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//