Array 1 82793-82375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVV01000029.1 Corynebacterium diphtheriae bv. gravis strain 1052 Contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 82792 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 82730 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 82666 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 82602 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 82538 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 82474 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 82410 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : TCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCAT # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 1383-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVV01000045.1 Corynebacterium diphtheriae bv. gravis strain 1052 Contig_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1382 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 1321 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 1260 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 1199 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 1138 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 1076 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 1014 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 953 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 892 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 831 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 770 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 709 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 648 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 587 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 526 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 465 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 404 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 343 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 282 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 221 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 160 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 99 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.9 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CTTAAAGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 61706-61978 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVV01000005.1 Corynebacterium diphtheriae bv. gravis strain 1052 Contig_112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61706 29 100.0 32 ............................. GGGTCGGGTCTGATGGCATGCCGGTCGCTCGC 61767 29 100.0 32 ............................. TTCGGCAGCGTCACGCGCAGCGACCTCGCTTT 61828 29 96.6 32 A............................ AAAATGTGGGGAGAATCCCCGCAATCTGAGCT 61889 29 100.0 32 ............................. TCAGCAAATAACACCCGTGGATGGTGCTTTAA 61950 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GGAAATACCTCCGCGTGTGCGGAGAAGAC # Left flank : CCCGGTGACGATCACGCGCATGCCCTTGGTGAGGGATTCTGCAACGTTTTCGGCAGCTTGGTGCCAAATGTTGCACTGCAAGAAAACCGCGTCACCATCTACCCACTGGTTCGACCGGGAGTCGTACTTCTTGGAGGTAGAAGCAACACGGAAGCTGGTTACTGCTACACCATTAGGGGTGAAGCGAAGTTCTGGGTCTGCAACGAGATTACCAACAATGGTGACGTTGACTTCGCCTTGTGCCATTTTCTTTGTCCTTTGATCTAGTGCGCGTTGAAGGTATGCGCGCCCCACCACGCAGCACTTACACTGCTTCTTCTATAAGTTCCCGCACTTGCCCATCTTCAATCACAATGCCATGTTCACCGGTTTCATCAACCAGCTCAACCCACACCTGGAATCCTGTTTCTGTCGCAATATCGGAGAGAATCTTCTGAGACTCGGAGTCCATGAGCGAGCCATCAGACACACGCATCACACGAATATTTGGATTGCCTGCC # Right flank : CTGCGCGGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGTGCGGAGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //