Array 1 43978-45348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTF01000010.1 Escherichia coli strain MOD1-EC6673 MOD1-EC6673_10_length_156255_cov_56.5131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43978 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 44039 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 44100 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 44161 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 44222 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 44283 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 44344 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 44405 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 44466 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 44527 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 44588 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44649 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44710 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44771 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44832 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44893 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44954 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 45015 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 45076 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45137 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45198 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45259 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45320 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60850-61853 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNTF01000010.1 Escherichia coli strain MOD1-EC6673 MOD1-EC6673_10_length_156255_cov_56.5131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60850 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 60911 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 60972 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 61033 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 61094 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 61155 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 61216 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 61277 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 61338 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 61399 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 61460 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 61521 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 61582 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 61643 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 61703 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 61764 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 61825 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //